BenchBaze - DNA Map Viewer

This is a DNA map viewer based on Teselagen's Open Vector Editor (OVE), adapted for, and integrated in, BenchBaze.

It loads a DNA map file from a URL supplied by BenchBaze, parses it and renders it.

Setup

1. Install dependencies:

yarn install

2. Build the app

yarn build

3. Optionally, start the development server for testing:

yarn start

The server listens on port 5173 by default.

Usage

Send a GET request with the following query parameters:

Parameter	Required	Description
file_name	Yes	URL/path to the sequence file to fetch
file_format	Yes	Parser hint used in the app (gbk or dna)
title	No	Display name shown in the editor and used for export filenames
show_oligos	No	If present, primers are shown and translations are hidden

Example:

http://localhost:5173/?file_name=https://example.org/plasmids/pABC123.gbk&file_format=gbk&title=pABC123

Notes

• At the moment, the viewer is read-only (readOnly: true in editor config).
• The toolbar includes tools for cut sites, features, oligos, ORFs, visibility, and find.
• Full-length generic annotations with these names are filtered out before rendering: synthetic dna construct, recombinant plasmid, source.