GitHub - igridchyn/neuro-analysis: Machine learning / data anlysis scripts used for my papers.

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Machine learning / data anlysis scripts used for my papers.

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Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
deprecated		deprecated
review		review
.gitignore		.gitignore
6AWM_update.ipynb		6AWM_update.ipynb
Axona2dat3_15_128.c		Axona2dat3_15_128.c
Axona2dat3_17_Digout.c		Axona2dat3_17_Digout.c
Dat_to_Mda.py		Dat_to_Mda.py
LISTS.txt		LISTS.txt
analyze_bayesian_decoding.py		analyze_bayesian_decoding.py
analyze_divergences.py		analyze_divergences.py
analyze_swr_decoding.py		analyze_swr_decoding.py
analyze_swr_dump.py		analyze_swr_dump.py
analyze_swrs.py		analyze_swrs.py
analyze_waveshape_based_decoding.py		analyze_waveshape_based_decoding.py
anova_model_test_animal.R		anova_model_test_animal.R
autoclean_alltet.sh		autoclean_alltet.sh
axtrk_to_whl.py		axtrk_to_whl.py
batch_rename.py		batch_rename.py
bayesian_decoding.py		bayesian_decoding.py
behavior_vs_pfs.py		behavior_vs_pfs.py
build_binary_environment_coding_model.py		build_binary_environment_coding_model.py
build_population_vector_svm_classifier.py		build_population_vector_svm_classifier.py
call_log.py		call_log.py
cb_behavioural.py		cb_behavioural.py
cb_examples.py		cb_examples.py
cb_generate_sessions_list.py		cb_generate_sessions_list.py
cell_selectivity.py		cell_selectivity.py
cellwise_light_effect.py		cellwise_light_effect.py
center_of_mass.py		center_of_mass.py
classify_vectors_with_svm.py		classify_vectors_with_svm.py
clu_DKL.py		clu_DKL.py
clu_clean_kde_ratio.py		clu_clean_kde_ratio.py
clu_clear_couple.c		clu_clear_couple.c
clu_clear_couple.py		clu_clear_couple.py
clu_clear_couple_sgclust.py		clu_clear_couple_sgclust.py
clu_cluster_dists.py		clu_cluster_dists.py
clu_fix_cluster_shifts.py		clu_fix_cluster_shifts.py
clu_num_clust_all_tetr.py		clu_num_clust_all_tetr.py
clu_refractory_fraction.py		clu_refractory_fraction.py
clu_small_clus.py		clu_small_clus.py
clures_extract_sessionwise.py		clures_extract_sessionwise.py
clures_merge_sessions.py		clures_merge_sessions.py
clures_merge_tetrodes_by_sessions.py		clures_merge_tetrodes_by_sessions.py
clures_merge_tetrodewise.py		clures_merge_tetrodewise.py
clures_split.py		clures_split.py
cofiring_by_environment.py		cofiring_by_environment.py
cofiring_in_intervals.py		cofiring_in_intervals.py
coherence.py		coherence.py
col_mean_and_sd.py		col_mean_and_sd.py
compare_decoder_confidences.py		compare_decoder_confidences.py
compare_firing_rates.py		compare_firing_rates.py
compare_timstamps.py		compare_timstamps.py
confidences_waking_vs_sleep.py		confidences_waking_vs_sleep.py
configs_compare.py		configs_compare.py
confusion_matrix.py		confusion_matrix.py
convert_par_to_tetr_conf.py		convert_par_to_tetr_conf.py
copy_preclean.sh		copy_preclean.sh
correlation.py		correlation.py
correlation_subset.py		correlation_subset.py
correlation_subset_2env.py		correlation_subset_2env.py
correlations_compare_loo.py		correlations_compare_loo.py
cross_corrs.py		cross_corrs.py
dama_dat2timestamps.py		dama_dat2timestamps.py
dat_firfilt.py		dat_firfilt.py
dat_interval.py		dat_interval.py
dat_ripdet.py		dat_ripdet.py
dat_rotate.py		dat_rotate.py
dat_to_mdab.sh		dat_to_mdab.sh
debug_compare_intervals_rates.py		debug_compare_intervals_rates.py
decode_swr_binary.py		decode_swr_binary.py
decoding_accuracy.py		decoding_accuracy.py
digbin_extract.py		digbin_extract.py
domain_transfer.py		domain_transfer.py
draw_cheeseboard.py		draw_cheeseboard.py
dump_population_vectors_around_timestamps.py		dump_population_vectors_around_timestamps.py
dump_waking_rasters.sh		dump_waking_rasters.sh
elife_compile_pfs_list.py		elife_compile_pfs_list.py
elife_figure_inout_compare.py		elife_figure_inout_compare.py
example_decoding.py		example_decoding.py
exercises.py		exercises.py
fet_bin_to_text.py		fet_bin_to_text.py
figure_labels.py		figure_labels.py
filter_500_700.txt		filter_500_700.txt
filter_700_1000.txt		filter_700_1000.txt
filter_channel		filter_channel
filter_channel.cpp		filter_channel.cpp
filter_channel_int		filter_channel_int
firing_rate.py		firing_rate.py
firing_rates_intervals.py		firing_rates_intervals.py
fr_change_from_selectivity.py		fr_change_from_selectivity.py
frs_vs_specificity_and_time_wrt_sync.py		frs_vs_specificity_and_time_wrt_sync.py
fs_list_sessions.py		fs_list_sessions.py
fs_organise_by_days.py		fs_organise_by_days.py
gauss_diff.py		gauss_diff.py
generate_binary_occupancy_map.py		generate_binary_occupancy_map.py
generate_p1b1.py		generate_p1b1.py
generate_swr_windows_around.py		generate_swr_windows_around.py
generate_swr_windows_with_spike_number.py		generate_swr_windows_with_spike_number.py
generate_timstamps.py		generate_timstamps.py
generate_total_res.py		generate_total_res.py