[pre-commit.ci] pre-commit autoupdate (#126)

* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.2.2 → v0.3.2](astral-sh/ruff-pre-commit@v0.2.2...v0.3.2)

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

.pre-commit-config.yaml

@@ -13,7 +13,7 @@ repos:
         # doesn't work in combination with jupytext hook yet. See https://github.com/mwouts/jupytext/issues/580
         exclude: "docs/notebooks/.*\\.md"
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.2.2
+    rev: v0.3.2
     hooks:
       - id: ruff
         types_or: [python, pyi, jupyter]

docs/notebooks/tutorial_3k.ipynb

@@ -1333,9 +1333,9 @@
    "outputs": [],
    "source": [
     "adata.obs[\"cnv_status\"] = \"normal\"\n",
-    "adata.obs.loc[\n",
-    "    adata.obs[\"cnv_leiden\"].isin([\"10\", \"16\", \"13\", \"8\", \"12\", \"17\", \"1\", \"14\", \"11\"]), \"cnv_status\"\n",
-    "] = \"tumor\""
+    "adata.obs.loc[adata.obs[\"cnv_leiden\"].isin([\"10\", \"16\", \"13\", \"8\", \"12\", \"17\", \"1\", \"14\", \"11\"]), \"cnv_status\"] = (\n",
+    "    \"tumor\"\n",
+    ")"
    ]
   },
   {

src/infercnvpy/__init__.py

@@ -1,4 +1,5 @@
 """Python library to infer copy number variation (CNV) from single-cell RNA-seq data."""
+
 from importlib.metadata import version
 
 from . import datasets, io, pl, pp, tl

src/infercnvpy/datasets/__init__.py

@@ -1,4 +1,5 @@
 """Example datasets."""
+
 import importlib.resources as pkg_resources
 
 import scanpy as sc

src/infercnvpy/tl/_scores.py

@@ -1,4 +1,5 @@
 """Scores to summarize and assess copy number variation."""
+
 import warnings
 from collections.abc import Mapping
 from typing import Any, Optional