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@hurwitzlab

Hurwitz Lab

Repository of the lab of Bonnie Hurwitz (UA)

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  1. elm-imicrobe-spa elm-imicrobe-spa Public

    Elm 10 4

  2. docker-mothur docker-mothur Public

    Docker image for running mothur.

    Makefile 4

  3. appetizer appetizer Public

    Create the app.json for Stampede

    Elm 4 1

  4. biosys-analytics biosys-analytics Public

    BE434/535 Biosystems Analytics

    Python 3 37

  5. planet-microbe-functional-annotation planet-microbe-functional-annotation Public

    Python 3

  6. gnu-parallel-yourself gnu-parallel-yourself Public

    Template script and instructions for using GNU Parallel in place of the TACC Launcher on Stampede2.

    Shell 2 1

Repositories

Showing 10 of 253 repositories
  • be434-Spring2025 Public
    Python 0 MIT 25 0 2 Updated Mar 21, 2025
  • metag_topic_modeling Public

    topic modeling approaches for metagenomics

    Jupyter Notebook 0 1 0 0 Updated Mar 3, 2025
  • be487-fall-2024 Public

    metagenomics 487/587

    Jupyter Notebook 0 0 0 0 Updated Feb 17, 2025
  • CI2025 Public

    Applied Cyberinfrastructure course at UA

    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 27, 2025
  • biosystems-spring2025 Public
    Python 0 MIT 0 0 0 Updated Dec 12, 2024
  • chapel_metag_pipeline Public

    metagenomics workflow using chapel

    0 0 0 0 Updated Aug 22, 2024
  • be434-Spring2024 Public
    Jupyter Notebook 0 MIT 21 0 0 Updated Apr 30, 2024
  • phage_detection_benchmarks Public

    Code used to benchmark metagenomic phage detection tools.

    Python 2 MIT 1 0 1 Updated Mar 3, 2024
  • Simulated_metagenomes_generator Public

    Pipeline to generate simulated metagenome of known composition using InSilicoSeq

    Shell 0 MIT 0 0 0 Updated Jul 14, 2023
  • mash Public
    R 1 GPL-3.0 0 0 2 Updated Jul 6, 2023
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