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Fix pandas FutureWarning #36

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Fix pandas FutureWarning #36

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4 changes: 2 additions & 2 deletions compleasm.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1278,7 +1278,7 @@ def Run_busco_mode(self):

# remaining genes
for gene_id in filtered_species:
mapped_records = grouped_df.get_group(gene_id)
mapped_records = grouped_df.get_group((gene_id,))
mapped_records = mapped_records.sort_values(by=["I+L"], ascending=False)
if self.specified_contigs is not None:
mapped_records = mapped_records[mapped_records["Contig_id"].isin(self.specified_contigs)]
Expand Down Expand Up @@ -1541,7 +1541,7 @@ def Run_lite_mode(self):
full_table_busco_format_writer.write(
"# Busco id\tStatus\tSequence\tGene Start\tGene End\tStrand\tScore\tLength\tOrthoDB url\tDescription\n")
for gene_id in all_species:
mapped_records = grouped_df.get_group(gene_id)
mapped_records = grouped_df.get_group((gene_id,))
mapped_records = mapped_records.sort_values(by=["I+L"], ascending=False)
if self.specified_contigs is not None:
mapped_records = mapped_records[mapped_records["Contig_id"].isin(self.specified_contigs)]
Expand Down