0.9.1

Minor release updating documentation and conda dependencies.

What's Changed

• Add tetgen dependency from conda by @stefsmeets in #287
• Update contributing guidelines by @stefsmeets in #288

Full Changelog: 0.9.0...0.9.1

0.9.0

What's Changed

• Streamline and finetune dashboards by @stefsmeets in #276
• Move dashboards to own repo by @stefsmeets in #279
• Update dependencies by @github-actions in #284
• Update pre-commit hooks by @github-actions in #283
• Add missing documentation by @stefsmeets in #285

Full Changelog: 0.8.1...0.9.0

0.8.1

What's Changed

• Add missing sample files for data submodule to distribution by @stefsmeets in #278

Full Changelog: 0.8.0...0.8.1

0.8.0

Highlights

• Dashboards! For meshing! It's a work in progress, check it out here.

What's Changed

• Update documentation by @stefsmeets in #271
• Add function to plot set of points to plotting submodule by @stefsmeets in #272
• Remove thin polygons with area = 0 causing the program to hang by @stefsmeets in #273
• Add dashboards for generating meshes and mesh metrics by @stefsmeets in #274

Full Changelog: 0.7.0...0.8.0

0.7.0

Highlights

• Simplified api
• Improved label specification for plots
• New examples demonstrating interface with finite element libraries
• New method to crop meshes

What's Changed

• Simplify api by @stefsmeets in #250
• Use jupytext to store source code for notebooks by @stefsmeets in #251
• Update documentation by @stefsmeets in #252
• Add example to readme.md and update documentation by @stefsmeets in #253
• Add flowchart with class hierarchy by @stefsmeets in #254
• Update dependencies by @github-actions in #256
• Update pre-commit hooks by @github-actions in #255
• Demonstrate Nanomesh workflow in combination with Sfepy by @stefsmeets in #259
• Refactor triangulate by @stefsmeets in #260
• Add method to remove points that do not belong to any cells by @stefsmeets in #263
• Demonstrate Nanomesh workflow in combination with scikit-fem by @stefsmeets in #262
• Add notebook with getfem example by @stefsmeets in #264
• Improve label specification in mesh plots by @stefsmeets in #265
• Reduce size of large data volumes used for testing by @stefsmeets in #266
• Add method to crop meshes by @stefsmeets in #267
• Update pre-commit hooks by @github-actions in #268
• Update dependencies by @github-actions in #269

Full Changelog: 0.6.0...0.7.0

0.6.0

Highlights

• Revised documentation with a broader range of examples
• Better handling of labels and region markers
• More consistent mesh / meshing API

What's Changed

• Return MeshContainer from tetrahedralize by @stefsmeets in #166
• Label padding with strings for 3D meshes by @stefsmeets in #187
• Update canonical representation for common objects by @stefsmeets in #188
• Refactor tests by @stefsmeets in #190
• Move simple_triangulate to own submodule by @stefsmeets in #193
• Add constraint attribute to region marker by @stefsmeets in #192
• Label boundaries in 2D plot separately by @stefsmeets in #191
• Support python 3.9 by @stefsmeets in #63
• Update dependencies by @github-actions in #207
• Update pre-commit hooks by @github-actions in #206
• Revert readthedocs version to 3.8 by @stefsmeets in #208
• Implement segment markers to track internal boundaries by @stefsmeets in #204
• Add options for plotting labels on 2D mesh plots by @stefsmeets in #211
• Fix bug in legend deduplication by @stefsmeets in #212
• Clean up plotting API by @stefsmeets in #213
• Update dependencies by @github-actions in #215
• Fix color cycle for 2D triangle plots by @stefsmeets in #217
• Improve labeling for 3D regions by @stefsmeets in #218
• Add options to show/hide labels and customize colors in mesh plot by @stefsmeets in #219
• Refactor 2D mesh plotting functions by @stefsmeets in #220
• Refactor code and clean up API by @stefsmeets in #223
• Add option to hide region marker in plot by @stefsmeets in #229
• Fix issues with documentation by @stefsmeets in #226
• Add decorator/metaclass to re-use docstrings by @stefsmeets in #234
• Rename function and update documentation for plotting by @stefsmeets in #236
• Add Hello world example to documentation by @stefsmeets in #237
• Use sample data from skimage and revise notebooks by @stefsmeets in #238
• Rename base types by @stefsmeets in #240
• Add class to manipulate list of region markers by @stefsmeets in #243
• Improve compatibility with GMSH by using 1-based indexing for region markers by @stefsmeets in #244
• Update CITATION.cff by @stefsmeets in #242
• Use __init_subclass__ to create registry for derived classes by @stefsmeets in #245

Full Changelog: 0.5.0...0.6.0

0.5.0

What's Changed

• Implement field names for Mesh types by @stefsmeets in #183
• Move 2D padding to Mesher2D from TriangleMesh by @stefsmeets in #179
• Update dependencies and remove open3d/trimesh interface functions by @stefsmeets in #159
• Add workflow to update dependencies by @stefsmeets in #160
• Fix workflow for updating dependencies by @stefsmeets in #163
• Consolidate testing workflows by @stefsmeets in #165
• Update dependencies by @github-actions in #167
• Fix syntax error (removed api) by @stefsmeets in #168
• Fix broken tests by @stefsmeets in #169
• Refactor generate_contours in Mesher2D by @stefsmeets in #171
• Add __init__.py to nanomash.mpl by @Laar in #172
• Fix KeyError when retrieving labels by @stefsmeets in #174
• Derive default label correctly with any cell data input by @stefsmeets in #177
• Fix deprecated API usage by @stefsmeets in #182

New Contributors

• @github-actions made their first contribution in #167

Full Changelog: 0.4.0...0.5.0

0.4.0

What's Changed

• Fixes the command to run tetgen by @Laar in #142
• Make tetgen available on github actions by @stefsmeets in #143
• Update installation instructions
• Add new MeshContainer class by @stefsmeets in #147
• Label sets of faces (2D) by @stefsmeets in #145
• Revise read/write methods on MeshContainer by @stefsmeets in #151
• Optimize workflow for local thresholding by @stefsmeets in #152
• Implement RegionMarker dataclass to track region markers by @stefsmeets in #155
• Remove nbstripout and update hooks by @stefsmeets in #157
• Bump version to 0.4.0 by @stefsmeets in #154

Full Changelog: 0.3.0...0.4.0

0.3.0

What's Changed

• Rename vertices to points, faces to cells by @stefsmeets in #126
• Split off generator code by @stefsmeets in #127,
  generator code now lives here: https://github.com/hpgem/generators
• Remove dependency on pygalmesh by @stefsmeets in #128
• Set up action for publishing to pypi by @stefsmeets in #104
• Fix corner contour closure by @Laar in #132
• Bugfix: prevent multiple points from being created by @stefsmeets in #133
• Add function to pad 3d mesh by @stefsmeets in #134
• Update documentation / installation instructions by @stefsmeets in #139
• Refactor meshing code by @stefsmeets in #140

Full Changelog: 0.2.0...0.3.0

0.2.0

Recent additions:

• Use static renderer for mesh output on readthedocs (#121)
• Fix API inconsistencies (#114)
• Fix labels in TetraMesh.show_submesh(), and document usage in notebook (#112)
• Implement multi-domain meshing for 3D data using tetgen, see example notebook (#105, #107, #108)
• Add function to pad 2D mesh and example notebook (#103)
• Update documentation for minimum_bounding_rectangle() (#102)
• Add notebook demonstrating regionprops to examine pore properties from 2D image (#101)
• Add banner for project in the readme (#96)
• Implement aligned region of interest selection using FFTs (#94)
• Set up bump2version to version bump with a single command (#95)