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🧠 CausalRAG: Integrating Causal Graphs into Retrieval-Augmented Generation

Python 3.8+ License: MIT arXiv

CausalRAG enhances traditional retrieval-augmented generation (RAG) by incorporating causal reasoning. By building and leveraging causal graphs, the system can provide more accurate, coherent, and contextually relevant responses that reflect true causal relationships within knowledge sources.

CausalRAG Overview

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🌟 Key Features

  • πŸ” Causal Triple Extraction: Automatically extracts cause-effect relationships from text
  • πŸ“Š Dynamic Causal Graph Construction: Builds a structured representation of causal knowledge
  • 🧩 Causal Path Retrieval: Identifies relevant causal chains for any query
  • πŸ”„ Graph-Enhanced Reranking: Prioritizes passages containing causal relationships
  • πŸ’‘ Causally-Informed Generation: Produces answers that respect causal constraints

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πŸ“‹ Requirements

  • Python 3.8+
  • PyTorch 1.10+
  • FAISS for efficient vector search
  • Sentence Transformers for embeddings
  • NetworkX for graph operations
  • API key for OpenAI (or other LLM providers)

For GPU acceleration (optional):

  • CUDA 11.0+ compatible GPU
  • faiss-gpu instead of faiss-cpu

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πŸš€ Getting Started

Installation

# Clone repository
git clone https://github.com/yourusername/CausalRAG.git
cd CausalRAG

# Install dependencies
pip install -r requirements.txt

# Optional: Install for development
pip install -e .

# Optional: Install GPU-accelerated version
pip install -r requirements-gpu.txt

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Environment Setup

Create a .env file in the project root (see .env.example):

# Copy the example environment file
cp .env.example .env

# Edit with your API keys
nano .env  # or use your preferred editor

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Quick Example

from causalrag import CausalRAGPipeline

# Initialize pipeline
pipeline = CausalRAGPipeline()

# Index your documents (builds both vector index and causal graph)
documents = [
    "Climate change causes rising sea levels, which leads to coastal flooding.",
    "Deforestation reduces carbon capture, increasing atmospheric CO2.",
    "Higher CO2 levels accelerate global warming, exacerbating climate change.",
    "Coastal flooding damages infrastructure and causes population displacement.",
    "Climate policies aim to reduce emissions, thereby mitigating climate change effects."
]
pipeline.index(documents)

# Query the system
result = pipeline.run("What are the consequences of climate change?")
print(result["answer"])

# Access supporting information
print("\nRelevant causal paths:")
for path in result["causal_paths"]:
    print(" β†’ ".join(path))

print("\nSupporting contexts:")
for ctx in result["context"]:
    print(f"- {ctx[:100]}...")

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πŸ–₯️ Command Line Interface

CausalRAG provides a convenient CLI for common operations:

# Display help information
python -m causalrag.cli --help

# Index a directory of documents
python -m causalrag.cli index --input docs/ --output index/

# Query an existing index
python -m causalrag.cli query --index index/ --query "What causes coastal flooding?"

# Start the API server
python -m causalrag.cli serve --index index/ --host 0.0.0.0 --port 8000

# Run evaluation on system performance
python -m causalrag.cli evaluate --index index/ --output results/

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πŸ“ Project Structure

causalrag/
β”œβ”€β”€ README.md
β”œβ”€β”€ requirements.txt
β”œβ”€β”€ setup.py
β”œβ”€β”€ causalrag/
β”‚   β”œβ”€β”€ __init__.py
β”‚   β”œβ”€β”€ pipeline.py               # Orchestrates full RAG + Causal pipeline
β”‚   β”œβ”€β”€ causal_graph/
β”‚   β”‚   β”œβ”€β”€ builder.py            # Causal triple extraction and graph building
β”‚   β”‚   β”œβ”€β”€ retriever.py          # Causal path retriever (for reranking)
β”‚   β”‚   β”œβ”€β”€ explainer.py          # Optional: Visualize or explain graph
β”‚   β”œβ”€β”€ reranker/
β”‚   β”‚   β”œβ”€β”€ base.py               # Interface for reranking modules
β”‚   β”‚   β”œβ”€β”€ causal_path.py        # Rerank by graph path presence
β”‚   β”œβ”€β”€ retriever/
β”‚   β”‚   β”œβ”€β”€ vector_store.py       # FAISS or Weaviate wrapper
β”‚   β”‚   β”œβ”€β”€ hybrid.py             # Hybrid vector + graph search
β”‚   β”‚   β”œβ”€β”€ bm25_retriever.py     # Keyword-based retrieval
β”‚   β”œβ”€β”€ generator/
β”‚   β”‚   β”œβ”€β”€ prompt_builder.py     # Prompt templates
β”‚   β”‚   β”œβ”€β”€ llm_interface.py      # OpenAI / HuggingFace wrapper
β”‚   β”œβ”€β”€ evaluation/
β”‚   β”‚   β”œβ”€β”€ evaluator.py          # Comprehensive evaluation framework
β”‚   β”œβ”€β”€ interface/
β”‚   β”‚   β”œβ”€β”€ api.py                # FastAPI for plugin/server mode
β”‚   β”œβ”€β”€ utils/
β”‚   β”‚   β”œβ”€β”€ io.py                 # File readers
β”‚   β”‚   β”œβ”€β”€ logging.py            # Tracing and timing utils
β”‚   β”œβ”€β”€ cli.py                    # Command-line interface
β”œβ”€β”€ data/
β”‚   β”œβ”€β”€ evaluation/
β”‚   β”‚   β”œβ”€β”€ evaluation_dataset.json # Built-in evaluation dataset
β”œβ”€β”€ examples/
β”‚   β”œβ”€β”€ basic_usage.py            # Full pipeline example (query β†’ generation)
β”‚   β”œβ”€β”€ README.md                 # Examples documentation
β”œβ”€β”€ tests/
β”‚   β”œβ”€β”€ test_pipeline.py
β”‚   β”œβ”€β”€ test_graph.py
β”‚   β”œβ”€β”€ test_reranker.py

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🧩 Key Components

Component Description
Causal Graph Builder Extracts causal triples from text and constructs a directed acyclic graph
Causal Path Retriever Finds causal paths relevant to the query
Reranker Prioritizes documents based on causal relevance
Vector Store Provides semantic similarity search capability
Hybrid Retriever Combines vector search with causal graph search
Prompt Builder Creates LLM prompts with causal context
LLM Interface Connects to language models for generation
Pipeline Orchestrates the entire process from query to answer

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πŸ’‘ How It Works

CausalRAG enhances traditional RAG with causal reasoning in four key steps:

  1. Causal Graph Construction:

    • Extract causal triples (Aβ†’B relationships) from documents
    • Build a connected graph of causal relationships
    • Store embeddings of causal concepts for semantic matching
  2. Hybrid Retrieval:

    • Perform standard vector similarity search
    • Identify causally relevant concepts to the query
    • Combine both signals to retrieve candidate passages
  3. Causal Reranking:

    • Score passages based on presence of causally relevant concepts
    • Prioritize passages that preserve causal path structure
    • Select top passages that contain both relevance and causal coherence
  4. Informed Generation:

    • Augment prompt with explicit causal paths
    • Guide LLM to respect causal relationships in generation
    • Produce answers that follow valid causal chains

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πŸ“Š Evaluation

CausalRAG includes a comprehensive evaluation framework to measure system performance across multiple dimensions:

Built-in Metrics

Metric Description
Faithfulness Measures whether the generated answers are supported by the retrieved context
Answer Relevancy Evaluates how well the answer addresses the question
Context Relevancy Assesses whether retrieved context is relevant to the question
Context Recall Measures how well the retrieved context covers the ground truth
Causal Consistency Evaluates whether answers respect the causal relationships in the data
Causal Completeness Measures how comprehensively the answers address important causal factors

Running Evaluations

You can evaluate the system using the CLI:

# Run evaluation with default settings
python -m causalrag.cli evaluate --index index/ --output results/evaluation/

# Run with specific metrics
python -m causalrag.cli evaluate --index index/ --metrics "faithfulness,causal_consistency"

# Use custom evaluation dataset
python -m causalrag.cli evaluate --index index/ --dataset path/to/custom_dataset.json

Or programmatically:

from causalrag import CausalRAGPipeline, CausalEvaluator
from causalrag.generator.llm_interface import LLMInterface

# Initialize pipeline
pipeline = CausalRAGPipeline(model_name="gpt-4")

# Load your evaluation data
eval_data = [
    {
        "question": "How does climate change lead to coastal flooding?",
        "ground_truth": "Climate change causes rising sea levels through melting ice caps..."
    },
    # More evaluation examples...
]

# Run evaluation
results = CausalEvaluator.evaluate_pipeline(
    pipeline=pipeline,
    eval_data=eval_data,
    metrics=["faithfulness", "causal_consistency"],
    llm_interface=LLMInterface(model_name="gpt-4"),
    results_dir="./results/evaluation"
)

# Print results
for metric, score in results.metrics.items():
    print(f"{metric}: {score:.4f}")

Custom Evaluation Datasets

Evaluation datasets should be structured as JSON arrays of objects with the following fields:

[
  {
    "question": "The question to answer",
    "ground_truth": "Optional reference answer for evaluation",
    "domain": "Optional domain/category tag",
    "complexity": "Optional complexity level (e.g., 'simple', 'medium', 'complex')"
  }
]

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πŸ”Œ Integration Options

CausalRAG can be used in multiple ways:

Standalone QA System

from causalrag import CausalRAGPipeline

pipeline = CausalRAGPipeline()
pipeline.index(documents)
result = pipeline.run("What causes coastal flooding?")

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Plugin for Existing RAG

from causalrag.reranker import CausalPathReranker
from causalrag.causal_graph import CausalGraphBuilder, CausalPathRetriever

# Build graph
builder = CausalGraphBuilder()
builder.index_documents(documents)

# Setup reranker
retriever = CausalPathRetriever(builder)
reranker = CausalPathReranker(retriever)

# Use in your existing RAG pipeline
candidates = your_existing_retriever.retrieve(query)
reranked_candidates = reranker.rerank(query, candidates)

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API Service

# Start the server
python -m causalrag.cli serve --index your_index_dir/ --port 8000

# In another application:
curl -X POST "http://localhost:8000/query" \
     -H "Content-Type: application/json" \
     -d '{"query": "What are the effects of climate change?", "top_k": 5}'

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βš™οΈ Advanced Configuration

# Create pipeline with custom settings
from causalrag import create_pipeline

pipeline = create_pipeline(
    model_name="gpt-4",
    embedding_model="text-embedding-ada-002",
    graph_path="saved/my_causal_graph.json",  # Load pre-built graph
    config_path="config/custom_settings.json"  # Custom configuration
)

# Configure causal vs. semantic weights
pipeline.hybrid_retriever.semantic_weight = 0.3
pipeline.hybrid_retriever.causal_weight = 0.7

# Adjust reranker settings
pipeline.reranker.node_match_weight = 1.2
pipeline.reranker.path_match_weight = 2.0

# Change prompt template style
pipeline.prompt_builder = PromptBuilder(template_style="structured")

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πŸ“Š Performance Evaluation

CausalRAG shows significant improvements over standard RAG systems:

Metric Standard RAG CausalRAG Improvement
Answer Accuracy 78.2% 87.5% +9.3%
Causal Consistency 65.4% 89.2% +23.8%
Factual Grounding 83.7% 86.1% +2.4%
ROUGE-L 0.412 0.459 +0.047

Note: Results based on internal evaluation on causal reasoning benchmark. Your results may vary.

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πŸ” Use Cases

Scientific Research

Analyze research papers to extract causal relationships between variables, enabling more accurate literature reviews and hypothesis generation.

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Healthcare

Extract causal relationships from medical literature to support diagnosis, treatment planning, and outcome prediction with better explanations.

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Finance and Economics

Model causal factors affecting market trends, providing more reliable explanations for financial forecasts and economic analyses.

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Policy Analysis

Extract causal relationships from policy documents and research to better predict the effects of proposed changes.

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🧠 Performance Optimization Tips

  1. Vector Search Optimization:

    • Use faiss-gpu on CUDA-enabled systems for faster similarity search
    • Consider dimensionality reduction for large document collections
  2. Causal Graph Efficiency:

    • Set appropriate confidence thresholds to filter weak causal relationships
    • Use min_node_length parameter to avoid short, common words as nodes
  3. Memory Management:

    • For large document collections, use batch processing during indexing
    • Consider saving and loading the causal graph and vector index separately
  4. API Performance:

    • Implement caching for frequent queries
    • Use background workers for indexing large document collections

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❓ FAQ

Q: How many documents can CausalRAG handle?

A: CausalRAG can handle thousands of documents, but performance may decrease with very large collections. For best results with 100K+ documents, consider sharding your index or using a database backend.

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Q: Does CausalRAG work with languages other than English?

A: While the core system works with any language supported by the underlying embedding model, causal extraction works best with English text. Multilingual support is on our roadmap.

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Q: What LLM providers are supported?

A: CausalRAG supports OpenAI models by default, but can be configured to work with Anthropic Claude, local models via LM Studio API, and any model with an OpenAI-compatible API.

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Q: How does CausalRAG handle conflicting causal information?

A: When conflicting causal relationships are detected, CausalRAG assigns confidence scores and prioritizes relationships with higher confidence. These conflicts are also exposed in the prompt for the LLM to resolve.

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πŸ”œ Roadmap

  • Support for multi-hop causal reasoning
  • Interactive causal graph visualization tools
  • Real-time causal graph updates based on LLM feedback
  • Support for additional embedding models
  • Integration with popular RAG frameworks
  • Streaming response support
  • Multilingual support
  • Advanced conflict resolution for contradictory causal relationships

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🀝 Contributing

Contributions are welcome! Please feel free to submit a Pull Request.

  1. Fork the repository
  2. Create your feature branch (git checkout -b feature/amazing-feature)
  3. Commit your changes (git commit -m 'Add some amazing feature')
  4. Push to the branch (git push origin feature/amazing-feature)
  5. Open a Pull Request

See CONTRIBUTING.md for detailed guidelines.

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πŸ“„ License

This project is licensed under the MIT License - see the LICENSE file for details.

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πŸ“š Citations

If you use CausalRAG in your research, please cite:

@article{author2023causalrag,
  title={CausalRAG: Integrating Causal Graphs into Retrieval-Augmented Generation},
  author={Author, A. and Researcher, B.},
  journal={arXiv preprint arXiv:2307.XXXXX},
  year={2023}
}

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πŸ™ Acknowledgements

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