realSpike

Real-time closed loop visualization and analysis for flexible neural manipulation using two-photon holographic photostimulation

Installation

# clone the repo 
git clone https://github.com/hantman-lab/realSpike.git

# navigate to the repo
cd realSpike/ 

# install in editable mode
pip install -e .

Installing improv

You must already have redis installed.

You cannot simply pip install improv. Do the following instead:

# clone
git clone https://github.com/project-improv/improv.git

cd improv/

# add remote 
git remote add rwschonberg https://github.com/rwschonberg/improv
# fetch his branches
git fetch rwschonberg
# checkout a new branch off of the zmq branch
git checkout -b redis-only rwschonberg/zmq

### IMPORTANT: relax the numpy constraint in the pyproject.toml before in-place install
pip install -e .