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78 Open 561 Closed
78 Open 561 Closed
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Issues list

Add new aggregate report tiers "ProbAA" and "RefMatch" aggregate report pVACview
#1188 opened Jan 31, 2025 by susannasiebert
2
Fix incorrect pVACview header tooltips bug report / hotfix PR pVACview
#1187 opened Jan 31, 2025 by susannasiebert
1
@ldhtnp
Investigate TLStab (pMHC stability predictor) , TLImm (immunogenicity predictor)
#1183 opened Jan 28, 2025 by mhoang22
Reword filtering parameters to make distinction of usage for hard-filtering and tiering/prioritizing clear.
#1182 opened Jan 28, 2025 by susannasiebert 5.2.0
Investigate mouse_anchor readTable warnings pVACview
#1176 opened Jan 7, 2025 by malachig 5.2.0
@ldhtnp
Create documentation for the download_cwls/wdls commands documentation
#1175 opened Jan 7, 2025 by susannasiebert 5.2.0
Consider HLApollo for integration grant
#1172 opened Jan 6, 2025 by susannasiebert
Error: No command specified bug report / hotfix PR
#1158 opened Nov 19, 2024 by Geneece
6
Allow passing candidates to be based on binding OR percentile cutoff.
#1142 opened Sep 9, 2024 by malachig 5.2.0
2
Plans for adding NetTCR-2.0?
#1141 opened Sep 7, 2024 by lukaas33
1
Update pVACview documentation (vignette) and pVACview Tutorials page to mention anchor weights and anchor distribution tables documentation
#1140 opened Sep 5, 2024 by susannasiebert 5.2.0
1
pVACseq: Discrepancy between {sample_id}.all_epitopes.tsv and {sample_id}.fasta ? bug report / hotfix PR
#1118 opened Jun 26, 2024 by yiolino
8
Potential improvements to the pVACview NeoFox module pVACview
#1098 opened Apr 30, 2024 by susannasiebert
4 of 13 tasks
Consider integration of MixMHCPred2
#1093 opened Apr 15, 2024 by malachig
3
Output a visual representation of the graph after all spacers have been tested pVACvector
#1089 opened Apr 5, 2024 by susannasiebert 5.2.0
1
QUESTION: How to integrate netchop results to aditionnally filter possible peptides
#1064 opened Feb 19, 2024 by PierreLaplante
Overview of possible new prediction algorithms and their installation/run requirements
#1056 opened Jan 26, 2024 by susannasiebert
Consider integration with ACE a tool for generation of ELISpot configurations (peptide-pool assignments)
#1051 opened Jan 16, 2024 by malachig
Investigate PRIME prediction algorithm
#1029 opened Sep 25, 2023 by jhundal
1
Investigate DeepHLApan prediction algorithm grant
#1016 opened Aug 9, 2023 by susannasiebert
Evaluate MHCRank for integration
#1007 opened Jul 24, 2023 by malachig 5.2.0
Add matched WT to pVACfuse predictions grant
#993 opened Jul 6, 2023 by susannasiebert 5.2.0
Investigate Pepsickle as an alternative to NetChop
#986 opened Jun 22, 2023 by susannasiebert 5.2.0
Update reference proteome analysis to consider patient genotype grant
#948 opened Apr 7, 2023 by malachig
3
Create helper tool that generates information for a peptide order form grant
#947 opened Apr 5, 2023 by malachig 5.2.0
ProTip! Follow long discussions with comments:>50.