fix domain splitting with blank chain ID

greener-group · Aug 27, 2024 · 5a362e2 · 5a362e2
1 parent bad248f
commit 5a362e2
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/progres/chainsaw/src/utils/secondary_structure.py b/progres/chainsaw/src/utils/secondary_structure.py
@@ -23,7 +23,8 @@
 def calculate_ss(pdbfile, chain, stride_path, ssfile='pdb_ss'):
     assert os.path.exists(pdbfile)
     with open(ssfile, 'w') as ssout_file:
-        args = [stride_path, pdbfile, '-r' + chain]
+        chain_arg = '-r' + chain
+        args = [stride_path, pdbfile, chain_arg.rstrip()]
         LOG.info(f"Running command: {' '.join(args)}")
         try:
             subprocess.run(args,