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refactor: improve fetching repositories with custom properties #742

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Description

Related to: #740

This PR refactors how we fetch repositories with custom properties.

Changes

  • Replace manual endpoint construction (github.request.endpoint) with the built-in github.repos.getCustomPropertiesValues
  • Standardize pagination to 100 items per page to match other API calls
  • Improve error handling
  • Simplify nested loops and improve code readability

Testing Done

Ensured all unit tests pass.

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