forked from dissatisfaction-ai/scHierarchy
-
Notifications
You must be signed in to change notification settings - Fork 0
/
pyproject.toml
84 lines (79 loc) · 2.97 KB
/
pyproject.toml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
[tool.isort]
include_trailing_comma = true
multi_line_output = 3
profile = "black"
skip_glob = ["docs/*", "schierarchy/__init__.py"]
[tool.poetry]
authors = ["Artem Lomakin <[email protected]>", "Vitalii Kleshchevnikov <[email protected]>"]
classifiers = [
"Development Status :: 4 - Beta",
"Intended Audience :: Science/Research",
"Natural Language :: English",
"Programming Language :: Python :: 3.6",
"Programming Language :: Python :: 3.7",
"Operating System :: MacOS :: MacOS X",
"Operating System :: Microsoft :: Windows",
"Operating System :: POSIX :: Linux",
"Topic :: Scientific/Engineering :: Bio-Informatics",
]
description = "Hierachical cell identity toolkit."
documentation = "https://github.com/vitkl/schierarchy"
homepage = "https://github.com/vitkl/schierarchy"
license = "Apache License, Version 2.0"
name = "schierarchy"
packages = [
{include = "schierarchy"},
]
readme = "README.md"
version = "0.0.1"
[tool.poetry.dependencies]
anndata = ">=0.7.5"
black = {version = "==20.8b1", optional = true}
codecov = {version = ">=2.0.8", optional = true}
flake8 = {version = ">=3.7.7", optional = true}
importlib-metadata = {version = "^1.0", python = "<3.8"}
ipython = {version = ">=7.1.1", optional = true}
isort = {version = ">=5.7", optional = true}
jupyter = {version = ">=1.0", optional = true}
leidenalg = {version = "*", optional = true}
loompy = {version = ">=3.0.6", optional = true}
nbconvert = {version = ">=5.4.0", optional = true}
nbformat = {version = ">=4.4.0", optional = true}
nbsphinx = {version = "*", optional = true}
nbsphinx-link = {version = "*", optional = true}
pre-commit = {version = ">=2.7.1", optional = true}
pydata-sphinx-theme = {version = ">=0.4.0", optional = true}
pytest = {version = ">=4.4", optional = true}
python = ">=3.7.2,<4.0"
python-igraph = {version = "*", optional = true}
scanpy = {version = ">=1.6", optional = true}
scanpydoc = {version = ">=0.5", optional = true}
scikit-misc = {version = ">=0.1.3", optional = true}
cell2location = {git = "https://github.com/BayraktarLab/cell2location.git", branch="cell2location_hierachical_guide"}
pyro-ppl = {git = "https://github.com/pyro-ppl/pyro.git", branch="dev"}
scvi-tools = ">=0.14.3,<=0.14.6"
sphinx = {version = "^3.0", optional = true}
sphinx-autodoc-typehints = {version = "*", optional = true}
sphinx-rtd-theme = {version = "*", optional = true}
typing_extensions = {version = "*", python = "<3.8"}
[tool.poetry.extras]
dev = ["black", "pytest", "flake8", "codecov", "scanpy", "loompy", "jupyter", "nbformat", "nbconvert", "pre-commit", "isort"]
docs = [
"sphinx",
"scanpydoc",
"nbsphinx",
"nbsphinx-link",
"ipython",
"pydata-sphinx-theme",
"typing_extensions",
"sphinx-autodoc-typehints",
"sphinx-rtd-theme",
]
tutorials = ["scanpy", "leidenalg", "python-igraph", "loompy", "scikit-misc"]
[tool.poetry.dev-dependencies]
[build-system]
build-backend = "poetry.masonry.api"
requires = [
"poetry>=1.0",
"setuptools", # keep it here or "pip install -e" would fail
]