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@gerstung-lab

Gerstung Lab

Division for AI in Oncology at DKFZ

Popular repositories Loading

  1. PC-CHiP PC-CHiP Public

    Forked from yufu2015/PC-CHiP

    Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis

    Python 75 24

  2. MutationTimeR MutationTimeR Public

    An R package to time somatic mutations

    R 60 24

  3. SARS-CoV-2-International SARS-CoV-2-International Public

    International SARS-CoV-2 surveillance

    Jupyter Notebook 36 6

  4. AML-multistage AML-multistage Public

    Code accompanying Precision oncology for acute myeloid leukemia using a knowledge bank approach

    HTML 27 29

  5. BaSISS BaSISS Public

    Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper

    Jupyter Notebook 24 2

  6. PCAWG-11 PCAWG-11 Public

    Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)

    HTML 16 7

Repositories

Showing 10 of 38 repositories
  • Hetairos Public
    gerstung-lab/Hetairos’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Dec 13, 2024
  • Delphi Public
    gerstung-lab/Delphi’s past year of commit activity
    Jupyter Notebook 16 3 0 0 Updated Nov 5, 2024
  • segger Public Forked from EliHei2/segger_dev

    a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challenge of accurately segmenting individual cells in complex imaging datasets, leveraging a unique approach based on graph neural networks (GNNs).

    gerstung-lab/segger’s past year of commit activity
    Python 0 MIT 3 0 0 Updated Oct 16, 2024
  • CHOCOLAT-G2P Public
    gerstung-lab/CHOCOLAT-G2P’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Jul 4, 2024
  • CancerRisk Public Forked from alexwjung/CancerRisk
    gerstung-lab/CancerRisk’s past year of commit activity
    HTML 6 MIT 1 0 0 Updated Jul 3, 2024
  • SARS-CoV-2-International Public

    International SARS-CoV-2 surveillance

    gerstung-lab/SARS-CoV-2-International’s past year of commit activity
    Jupyter Notebook 36 6 3 1 Updated May 19, 2023
  • genomicsurveillance Public Forked from sagar87/genomicsurveillance
    gerstung-lab/genomicsurveillance’s past year of commit activity
    Jupyter Notebook 7 MIT 7 0 0 Updated Jan 2, 2023
  • SARS-CoV-2-Germany Public

    SARS-CoV-2 genomic surveillance in Germany

    gerstung-lab/SARS-CoV-2-Germany’s past year of commit activity
    Jupyter Notebook 1 Unlicense 0 0 0 Updated Dec 6, 2022
  • BaSISS Public

    Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper

    gerstung-lab/BaSISS’s past year of commit activity
    Jupyter Notebook 24 MIT 2 0 0 Updated Nov 21, 2022
  • uk_biobank_survival Public
    gerstung-lab/uk_biobank_survival’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Sep 6, 2022
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