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if clonal_frequency corresponds to purity / abberrant cell fraction from ascat #18

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ChelseaCHENX opened this issue Sep 9, 2023 · 0 comments

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@ChelseaCHENX
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Hi there!

My question is basically the title - for the column of clonal frequency in allele-specific copy number data of input, is this equivalent to purity / abberrant cell fraction from ascat (eg, in output, one sample is assigned with one number of purity / abberrant cell fraction for all segments)?

Asking as we don't have direct allele-specific copy number from sequencing but only deduction from ascat. Wondering if we can proceed using ascat.

Thank you very much!!

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