config_val.toml

model = "config_model.toml"

[general]
logging = 20
db_host = "localhost"
seed = 42
setup_dir = "example_basic"
sparse = false

[extract]
edge_move_threshold = 45

[solve]
parameters = "config_parameters.toml"
context = [ 2, 100, 100, 100,]
solver_type = "basic"

[inference_data]
checkpoint = 10
cell_score_threshold = 0.2
[inference_data.data_source]
gt_db_name = "linajea_mskcc_emb2_15fr_gt"
voxel_size = [ 1, 5, 1, 1,]
db_name = "linajea_mskcc_emb2_15fr_19700101_010203"
[inference_data.data_source.datafile]
filename = "mskcc_emb2_15fr.zip"
array = "raw"
[inference_data.data_source.roi]
offset = [ 0, 0, 0, 0,]
shape = [ 15, 205, 512, 512,]

[evaluate.parameters]
matching_threshold = 15

[predict]
use_swa = true
[predict.normalization]
type = "minmax"
perc_min = "perc0_01"
perc_max = "perc99_99"
norm_bounds = [ 2000, 7500,]
[predict.job]
num_workers = 1
run_on = "local"