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Funke lab

Janelia Research Campus

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  1. gunpowder gunpowder Public

    A library to facilitate machine learning on multi-dimensional images.

    Python 81 57

  2. lsd lsd Public

    🌈

    Python 54 34

  3. daisy daisy Public

    Block-wise task scheduling for large nD volumes.

    Python 30 18

  4. motile motile Public

    Multi-Object Tracker using Integer Linear Equations

    Python 30 5

  5. cellulus cellulus Public

    Unsupervised Instance Segmentation in Microscopy

    Python 23 2

  6. linajea linajea Public

    Python 17 7

Repositories

Showing 10 of 76 repositories
  • finn Public

    finn is (not) napari

    funkelab/finn’s past year of commit activity
    Python 3 BSD-3-Clause 1 19 4 Updated Mar 21, 2025
  • gunpowder Public

    A library to facilitate machine learning on multi-dimensional images.

    funkelab/gunpowder’s past year of commit activity
    Python 81 MIT 57 12 2 Updated Mar 21, 2025
  • daisy Public

    Block-wise task scheduling for large nD volumes.

    funkelab/daisy’s past year of commit activity
    Python 30 MIT 18 4 2 Updated Mar 20, 2025
  • quac Public

    Quantitative Attributions with Counterfactuals

    funkelab/quac’s past year of commit activity
    Python 2 MIT 0 25 0 Updated Mar 19, 2025
  • geff Public

    Reference implementation of the Graph Exchange File Format

    funkelab/geff’s past year of commit activity
    Python 0 MIT 0 15 2 Updated Mar 19, 2025
  • motile_tracker Public

    An application for interactive for tracking with motile

    funkelab/motile_tracker’s past year of commit activity
    Python 7 BSD-3-Clause 4 49 0 Updated Mar 18, 2025
  • spatial_graph Public

    A spatial graph datastructure for python

    funkelab/spatial_graph’s past year of commit activity
    C++ 3 MIT 1 2 0 Updated Mar 18, 2025
  • mhat Public

    Experiments and scripts for mhat: multi-hypothesis affinity tracking

    funkelab/mhat’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 18, 2025
  • napari-cellulus Public

    A napari plugin for cellulus

    funkelab/napari-cellulus’s past year of commit activity
    Python 3 BSD-3-Clause 0 5 1 Updated Mar 17, 2025
  • tree_view_sandbox Public

    A sandbox repo for developing a VisPy lineage tree viewer

    funkelab/tree_view_sandbox’s past year of commit activity
    Python 0 0 0 1 Updated Mar 17, 2025
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