Release 2.0.2

Minor release with bug fixes and minor changes. If you use the 2.x version ClipBam, CallMolecularConsensusReads or CallDuplexConsensusReads, please upgrade to this version.

Bug fixes

• SamRecordClipper.clipOverlappingReads now accounts for soft-clipped bases starting before the ends (#842) by @jrm5100. This affects ClipBam and consensus calling tools (CallMolecularConsensusReads and CallDuplexConsensusReads). This bug was introduced in #761 and in 2.0 release.

Minor Changes

• Add a missing param to constructor of StreamingPileupBuilder via apply() (#845) by @clintval .
• Update scala-xml to a much more recent version and drop the collections-compat requirement we no longer need (#838) by @tfenne.
• Ensure SamWriter always logs how many it wrote before close() (#829) by @clintval .