A Matlab toolbox for calcium imaging data analysis.
neuRoi
Many of the neuRoi functions are from the ROIing toolbox developed by Peter Rupprecht.
The data structure of calcium imaging experiment
Experiment -- NrModel Trial -- TrialModel
Download the source code. Then add the directory of the source code to MATLAB path. Note that you do not need to include sub-folders in the path. Required MATLAB packages:
- DSP System Toolbox
- Image Processing Toolbox
Documentation for further development of neuRoi can be found here wiki page.
- Bo Hu, Friedrich-Meischer Institute for Biomedical research, Basel
- Jan Eckhardt, Friedrich-Meischer Institute for Biomedical research, Basel
- Peter Rupprecht, Brain Research Institute, Zurich*
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.