flexcompute · daquinteroflex · Jan 23, 2025 · Jan 23, 2025 · Jan 23, 2025 · Jan 23, 2025
diff --git a/docs/basics/index.rst b/docs/basics/index.rst
@@ -9,8 +9,8 @@ This section provides a quick and general introduction to Tidy3D, serving as a g
     :class: example-notebook-toc
     :maxdepth: 0
 
-    ../../StartHere
-    ../../Simulation
-    ../../Primer
-    ../../WebAPI
-    ../../DivergedFDTDSimulation
+    Quickstart <https://www.flexcompute.com/tidy3d/examples/notebooks/StartHere>
+    Tidy3D First Walkthrough <https://www.flexcompute.com/tidy3d/examples/notebooks/Simulation>
+    Introduction on Tidy3D working principles <https://www.flexcompute.com/tidy3d/examples/notebooks/Primer>
+    Running simulations through the cloud <https://www.flexcompute.com/tidy3d/examples/notebooks/WebAPI>
+    How to troubleshoot a diverged FDTD simulation <https://www.flexcompute.com/tidy3d/examples/notebooks/DivergedFDTDSimulation>
diff --git a/docs/case_studies/fiber.rst b/docs/case_studies/fiber.rst
@@ -7,4 +7,4 @@ Fiber optics play a crucial role in optical communication, enabling the transmis
     :class: example-notebook-toc
     :maxdepth: 1
 
-    ../../AntiResonantHollowCoreFiber
+    Anti-resonant hollow-core fiber <https://www.flexcompute.com/tidy3d/examples/notebooks/AntiResonantHollowCoreFiber>
diff --git a/docs/case_studies/lenses.rst b/docs/case_studies/lenses.rst
@@ -7,7 +7,7 @@ Lenses are pivotal components in many optical systems. In this section, we delve
     :class: example-notebook-toc
     :maxdepth: 1
 
-    ../../OpticalLuneburgLens
-    ../../Metalens
-    ../../MidIRMetalens
-    ../../FresnelLens
+    3D optical Luneburg lens <https://www.flexcompute.com/tidy3d/examples/notebooks/OpticalLuneburgLens>
+    Metalens in the visible frequency range <https://www.flexcompute.com/tidy3d/examples/notebooks/Metalens>
+    Mid-IR metalens based on silicon nanopillars <https://www.flexcompute.com/tidy3d/examples/notebooks/MidIRMetalens>
+    Spherical Fresnel lens <https://www.flexcompute.com/tidy3d/examples/notebooks/FresnelLens>
diff --git a/docs/case_studies/metamaterials_gratings_periodic.rst b/docs/case_studies/metamaterials_gratings_periodic.rst
@@ -8,18 +8,18 @@ In addition, Tidy3D’s speed and scalability allow users to model the response
     :class: example-notebook-toc
     :maxdepth: 1
 
-    ../../DielectricMetasurfaceAbsorber
-    ../../GradientMetasurfaceReflector
-    ../../GrapheneMetamaterial
-    ../../TunableChiralMetasurface
-    ../../MicrowaveFrequencySelectiveSurface
-    ../../HighQSi
-    ../../HighQGe
-    ../../GratingEfficiency
-    ../../BiosensorGrating
-    ../../DistributedBraggReflectorCavity
-    ../../CMOSRGBSensor
-    ../../PlasmonicNanorodArray
-    ../../AllDielectricStructuralColor
-    ../../MIMResonator  
-    ../../VortexMetasurface
+    Dielectric metasurface absorber <https://www.flexcompute.com/tidy3d/examples/notebooks/DielectricMetasurfaceAbsorber>
+    Gradient metasurface reflector <https://www.flexcompute.com/tidy3d/examples/notebooks/GradientMetasurfaceReflector>
+    Graphene metamaterial absorber <https://www.flexcompute.com/tidy3d/examples/notebooks/GrapheneMetamaterial>
+    Tunable chiral metasurface based on phase change material <https://www.flexcompute.com/tidy3d/examples/notebooks/TunableChiralMetasurface>
+    Microwave frequency selective surface <https://www.flexcompute.com/tidy3d/examples/notebooks/MicrowaveFrequencySelectiveSurface>
+    High-Q silicon resonator <https://www.flexcompute.com/tidy3d/examples/notebooks/HighQSi>
+    Germanium Fano metasurface  <https://www.flexcompute.com/tidy3d/examples/notebooks/HighQGe>
+    Multilevel blazed diffraction grating <https://www.flexcompute.com/tidy3d/examples/notebooks/GratingEfficiency>
+    Biosensor grating simulation <https://www.flexcompute.com/tidy3d/examples/notebooks/BiosensorGrating>
+    Distributed Bragg reflector and cavity <https://www.flexcompute.com/tidy3d/examples/notebooks/DistributedBraggReflectorCavity>
+    CMOS RGB image sensor <https://www.flexcompute.com/tidy3d/examples/notebooks/CMOSRGBSensor>
+    Plasmonic cavity resonator consisting of a gold nanorod array <https://www.flexcompute.com/tidy3d/examples/notebooks/PlasmonicNanorodArray>
+    All-dielectric structural colors <https://www.flexcompute.com/tidy3d/examples/notebooks/AllDielectricStructuralColor>
+    MIM resonator <https://www.flexcompute.com/tidy3d/examples/notebooks/MIMResonator>
+    Vortex beam metasurface <https://www.flexcompute.com/tidy3d/examples/notebooks/VortexMetasurface>
diff --git a/docs/case_studies/microwave.rst b/docs/case_studies/microwave.rst
@@ -7,5 +7,5 @@ Microwave and RF (Radio Frequency) devices are essential for communication and s
     :class: example-notebook-toc
     :maxdepth: 1
 
-    ../../CoupledLineBandpassFilter
-    ../../RadarAbsorbingMetamaterial
+    Designing and optimizing a coupled line bandpass filter <https://www.flexcompute.com/tidy3d/examples/notebooks/CoupledLineBandpassFilter>
+    Radar absorbing metamaterial <https://www.flexcompute.com/tidy3d/examples/notebooks/RadarAbsorbingMetamaterial>
diff --git a/docs/case_studies/nanophotonics.rst b/docs/case_studies/nanophotonics.rst
@@ -7,9 +7,9 @@ Nanophotonics, a broad field at the intersection of photonics and nanotechnology
     :class: example-notebook-toc
     :maxdepth: 1
 
-    ../../NanostructuredBoronNitride
-    ../../NonHermitianMetagratings
-    ../../AndersonLocalization
-    ../../MoS2Waveguide
-    ../../RadiativeCoolingGlass
-    ../../MetalOxideSunscreen
+    Hyperbolic polaritons in nanostructured hBN <https://www.flexcompute.com/tidy3d/examples/notebooks/NanostructuredBoronNitride>
+    Unidirectional SPP from non-Hermitian metagratings <https://www.flexcompute.com/tidy3d/examples/notebooks/NonHermitianMetagratings>
+    Anderson localization of electromagnetic waves in 3D <https://www.flexcompute.com/tidy3d/examples/notebooks/AndersonLocalization>
+    Atomically thin waveguides based on MoS2 monolayers <https://www.flexcompute.com/tidy3d/examples/notebooks/MoS2Waveguide>
+    Radiative cooling glass coating <https://www.flexcompute.com/tidy3d/examples/notebooks/RadiativeCoolingGlass>
+    Metal oxide sunscreen <https://www.flexcompute.com/tidy3d/examples/notebooks/MetalOxideSunscreen>
diff --git a/docs/case_studies/photonic_crystals.rst b/docs/case_studies/photonic_crystals.rst
@@ -7,7 +7,7 @@ Photonic crystals utilize periodic optical nanostructures to affect the motion o
     :class: example-notebook-toc
     :maxdepth: 1
 
-    ../../Bandstructure
-    ../../OptimizedL3
-    ../../BistablePCCavity
-    ../../NanobeamCavity
+    Band structure calculation of a photonic crystal slab <https://www.flexcompute.com/tidy3d/examples/notebooks/Bandstructure>
+    Optimized photonic crystal L3 cavity <https://www.flexcompute.com/tidy3d/examples/notebooks/OptimizedL3>
+    Bistability in photonic crystal microcavities <https://www.flexcompute.com/tidy3d/examples/notebooks/BistablePCCavity>
+    Nanobeam cavity <https://www.flexcompute.com/tidy3d/examples/notebooks/NanobeamCavity>
diff --git a/docs/case_studies/photonic_opt.rst b/docs/case_studies/photonic_opt.rst
@@ -7,8 +7,8 @@ For gradient-based optimization examples, please see the inverse design/ adjoint
     :class: example-notebook-toc
     :maxdepth: 1
 
-    ../../ParticleSwarmOptimizedPBS
-    ../../BullseyeCavityPSO
-    ../../OpticalSwitchDBS
-    ../../SbendCMAES
-    ../../GeneticAlgorithmReflector
+    Particle swarm optimization of a polarization beam splitter <https://www.flexcompute.com/tidy3d/examples/notebooks/ParticleSwarmOptimizedPBS>
+    Particle swarm optimization of a bullseye cavity for quantum emitter light extraction <https://www.flexcompute.com/tidy3d/examples/notebooks/BullseyeCavityPSO>
+    Compact on-chip optical switch design optimization using DBS <https://www.flexcompute.com/tidy3d/examples/notebooks/OpticalSwitchDBS>
+    Optimization of an S-bend with CMA-ES <https://www.flexcompute.com/tidy3d/examples/notebooks/SbendCMAES>
+    Genetic algorithm optimization of a silicon on-chip reflector <https://www.flexcompute.com/tidy3d/examples/notebooks/GeneticAlgorithmReflector>
diff --git a/docs/case_studies/pic.rst b/docs/case_studies/pic.rst
@@ -7,38 +7,38 @@ Passive photonic integrated circuit (PIC) components form the backbone of many o
     :class: example-notebook-toc
     :maxdepth: 1
 
-    ../../YJunction
-    ../../WaveguideToRingCoupling
-    ../../WaveguideCrossing
-    ../../EulerWaveguideBend
-    ../../EdgeCoupler
-    ../../EffectiveIndexApproximation
-    ../../GratingCoupler
-    ../../FocusedApodGC
-    ../../MMI1x4
-    ../../RingResonator
-    ../../BilevelPSR
-    ../../WaveguideSizeConverter
-    ../../StripToSlotConverters
-    ../../BraggGratings
-    ../../BroadbandDirectionalCoupler
-    ../../PolarizationSplitterRotator
-    ../../8ChannelDemultiplexer
-    ../../THzDemultiplexerFilter
-    ../../PhotonicCrystalWaveguidePolarizationFilter
-    ../../90OpticalHybrid
-    ../../SWGBroadbandPolarizer
-    ../../ZeroCrossTalkTE
-    ../../AdiabaticCouplerLN
-    ../../90BendPolarizationSplitterRotator
-    ../../PlasmonicWaveguideCO2Sensor
-    ../../BilayerSiNEdgeCoupler
-    ../../ScaleInvariantWaveguide
-    ../../WaveguideGratingAntenna
-    ../../FreeFormCoupler
-    ../../MultiplexingMMI
-    ../../TaperedWgDispersion
-    ../../LNOIPolarizationSplitterRotator
-    ../../IntegratedVivaldiAntenna
-    ../../KerrSidebands
-    ../../AnisotropicMetamaterialBroadbandPBS
+    Waveguide Y junction <https://www.flexcompute.com/tidy3d/examples/notebooks/YJunction>
+    Waveguide to ring coupling <https://www.flexcompute.com/tidy3d/examples/notebooks/WaveguideToRingCoupling>
+    Waveguide crossing based on cosine tapers <https://www.flexcompute.com/tidy3d/examples/notebooks/WaveguideCrossing>
+    Euler waveguide bend <https://www.flexcompute.com/tidy3d/examples/notebooks/EulerWaveguideBend>
+    Inverse taper edge coupler <https://www.flexcompute.com/tidy3d/examples/notebooks/EdgeCoupler>
+    2D effective index approximation of 3D simulations <https://www.flexcompute.com/tidy3d/examples/notebooks/EffectiveIndexApproximation>
+    Uniform grating coupler <https://www.flexcompute.com/tidy3d/examples/notebooks/GratingCoupler>
+    Focusing apodized grating coupler <https://www.flexcompute.com/tidy3d/examples/notebooks/FocusedApodGC>
+    1x4 MMI power splitter <https://www.flexcompute.com/tidy3d/examples/notebooks/MMI1x4>
+    2D ring resonator <https://www.flexcompute.com/tidy3d/examples/notebooks/RingResonator>
+    Broadband bi-level taper polarization rotator-splitter <https://www.flexcompute.com/tidy3d/examples/notebooks/BilevelPSR>
+    Waveguide mode size converters <https://www.flexcompute.com/tidy3d/examples/notebooks/WaveguideSizeConverter>
+    Strip to slot waveguide converters <https://www.flexcompute.com/tidy3d/examples/notebooks/StripToSlotConverters>
+    Waveguide bragg gratings <https://www.flexcompute.com/tidy3d/examples/notebooks/BraggGratings>
+    Broadband directional coupler <https://www.flexcompute.com/tidy3d/examples/notebooks/BroadbandDirectionalCoupler>
+    Compact polarization splitter-rotator <https://www.flexcompute.com/tidy3d/examples/notebooks/PolarizationSplitterRotator>
+    8-Channel mode and polarization de-multiplexer <https://www.flexcompute.com/tidy3d/examples/notebooks/8ChannelDemultiplexer>
+    THz integrated demultiplexer/filter based on a ring resonator <https://www.flexcompute.com/tidy3d/examples/notebooks/THzDemultiplexerFilter>
+    Photonic crystal waveguide polarization filter <https://www.flexcompute.com/tidy3d/examples/notebooks/PhotonicCrystalWaveguidePolarizationFilter>
+    90 degree optical hybrid <https://www.flexcompute.com/tidy3d/examples/notebooks/90OpticalHybrid>
+    Broadband polarizer assisted by anisotropic metamaterial <https://www.flexcompute.com/tidy3d/examples/notebooks/SWGBroadbandPolarizer>
+    Exceptional coupling for waveguide crosstalk reduction <https://www.flexcompute.com/tidy3d/examples/notebooks/ZeroCrossTalkTE>
+    Thin film lithium niobate adiabatic waveguide coupler <https://www.flexcompute.com/tidy3d/examples/notebooks/AdiabaticCouplerLN>
+    Polarization splitter and rotator based on 90 degree bends <https://www.flexcompute.com/tidy3d/examples/notebooks/90BendPolarizationSplitterRotator>
+    Plasmonic waveguide sensor for carbon dioxide detection <https://www.flexcompute.com/tidy3d/examples/notebooks/PlasmonicWaveguideCO2Sensor>
+    Bi-layer SiN edge coupler in the visible frequency <https://www.flexcompute.com/tidy3d/examples/notebooks/BilayerSiNEdgeCoupler>
+    Dielectric waveguide with scale-invariant effective index <https://www.flexcompute.com/tidy3d/examples/notebooks/ScaleInvariantWaveguide>
+    Unidirectional waveguide grating antenna <https://www.flexcompute.com/tidy3d/examples/notebooks/WaveguideGratingAntenna>
+    Free-form chip-to-chip coupler <https://www.flexcompute.com/tidy3d/examples/notebooks/FreeFormCoupler>
+    MMI-based NIR/MIR demultiplexer <https://www.flexcompute.com/tidy3d/examples/notebooks/MultiplexingMMI>
+    Dispersion calculation in tapered waveguide <https://www.flexcompute.com/tidy3d/examples/notebooks/TaperedWgDispersion>
+    Designing a polarization splitter/rotator on thin-film lithium niobate <https://www.flexcompute.com/tidy3d/examples/notebooks/LNOIPolarizationSplitterRotator>
+    Integrated plasmonic Vivaldi antenna with silicon waveguide <https://www.flexcompute.com/tidy3d/examples/notebooks/IntegratedVivaldiAntenna>
+    Generation of Kerr sideband <https://www.flexcompute.com/tidy3d/examples/notebooks/KerrSidebands>
+    Broadband polarization beam splitter using anisotropic metamaterial <https://www.flexcompute.com/tidy3d/examples/notebooks/AnisotropicMetamaterialBroadbandPBS>
diff --git a/docs/case_studies/pic_active.rst b/docs/case_studies/pic_active.rst
@@ -8,7 +8,7 @@ At the moment, Tidy3D’s heat solver can be used with the FDTD solver to model
     :class: example-notebook-toc
     :maxdepth: 1
 
-    ../../MetalHeaterPhaseShifter
-    ../../ThermallyTunedRingResonator
-    ../../MachZehnderModulator
-    ../../ThermoOpticDopedModulator
+    Thermally tuned waveguide <https://www.flexcompute.com/tidy3d/examples/notebooks/MetalHeaterPhaseShifter>
+    Thermally tuned ring resonator <https://www.flexcompute.com/tidy3d/examples/notebooks/ThermallyTunedRingResonator>
+    Carrier injection based Mach-Zehnder modulator <https://www.flexcompute.com/tidy3d/examples/notebooks/MachZehnderModulator>
+    Thermo-optic modulator with a doped silicon heater <https://www.flexcompute.com/tidy3d/examples/notebooks/ThermoOpticDopedModulator>
diff --git a/docs/case_studies/scattering_far_field.rst b/docs/case_studies/scattering_far_field.rst
@@ -7,8 +7,8 @@ In this section, we explore the interaction between light and materials at the n
     :class: example-notebook-toc
     :maxdepth: 1
 
-    ../../Near2FarSphereRCS
-    ../../PlasmonicNanoparticle
-    ../../PlasmonicYagiUdaNanoantenna
-    ../../ZonePlateFieldProjection
-    ../../MultipoleExpansion
+    Scattering cross-section calculation of a dielectric sphere <https://www.flexcompute.com/tidy3d/examples/notebooks/Near2FarSphereRCS>
+    Scattering of a plasmonic nanoparticle <https://www.flexcompute.com/tidy3d/examples/notebooks/PlasmonicNanoparticle>
+    Plasmonic Yagi-Uda nanoantenna <https://www.flexcompute.com/tidy3d/examples/notebooks/PlasmonicYagiUdaNanoantenna>
+    Field projection for a zone plate <https://www.flexcompute.com/tidy3d/examples/notebooks/ZonePlateFieldProjection>
+    Multipole expansion for electromagnetic scattering <https://www.flexcompute.com/tidy3d/examples/notebooks/MultipoleExpansion>
diff --git a/docs/features/adjoint.rst b/docs/features/adjoint.rst
@@ -9,19 +9,19 @@ For gradient-free optimization examples, please see the global optimization sect
     :class: example-notebook-toc
     :maxdepth: 1
 
-    ../../Invdes
-    ../../AdjointPlugin0Quickstart
-    ../../AdjointPlugin1Intro
-    ../../AdjointPlugin2GradientChecking
-    ../../AdjointPlugin3InverseDesign
-    ../../AdjointPlugin4MultiObjective
-    ../../AdjointPlugin5BoundaryGradients
-    ../../AdjointPlugin6GratingCoupler
-    ../../AdjointPlugin7Metalens
-    ../../AdjointPlugin8WaveguideBend
-    ../../AdjointPlugin9WDM
-    ../../AdjointPlugin10YBranchLevelSet
-    ../../AdjointPlugin11CircuitMZI
-    ../../AdjointPlugin12LightExtractor
-    ../../AdjointPlugin13Metasurface
-    ../../AdjointPlugin14PreFab
+    Inverse design plugin <https://www.flexcompute.com/tidy3d/examples/notebooks/InverseDesign/>
+    Inverse design quickstart <https://www.flexcompute.com/tidy3d/examples/notebooks/AdjointPlugin0Quickstart>
+    Jax, automatic differentiation, and adjoint optimization: basics <https://www.flexcompute.com/tidy3d/examples/notebooks/AdjointPlugin1Intro>
+    Adjoint analysis of a multi-layer slab <https://www.flexcompute.com/tidy3d/examples/notebooks/AdjointPlugin2GradientChecking>
+    Inverse design optimization of a mode converter <https://www.flexcompute.com/tidy3d/examples/notebooks/AdjointPlugin3InverseDesign>
+    Multi-objective adjoint optimization <https://www.flexcompute.com/tidy3d/examples/notebooks/AdjointPlugin4MultiObjective>
+    Inverse design optimization of a waveguide taper <https://www.flexcompute.com/tidy3d/examples/notebooks/AdjointPlugin5BoundaryGradients>
+    Inverse design optimization of a compact grating coupler <https://www.flexcompute.com/tidy3d/examples/notebooks/AdjointPlugin6GratingCoupler>
+    Inverse design optimization of a metalens <https://www.flexcompute.com/tidy3d/examples/notebooks/AdjointPlugin7Metalens>
+    Adjoint-based shape optimization of a waveguide bend <https://www.flexcompute.com/tidy3d/examples/notebooks/AdjointPlugin8WaveguideBend>
+    Adjoint optimization of a wavelength division multiplexer <https://www.flexcompute.com/tidy3d/examples/notebooks/AdjointPlugin9WDM>
+    Parameterized level set optimization of a y-branch <https://www.flexcompute.com/tidy3d/examples/notebooks/AdjointPlugin10YBranchLevelSet>
+    Inverse design integrated with circuit simulation <https://www.flexcompute.com/tidy3d/examples/notebooks/AdjointPlugin11CircuitMZI>
+    Adjoint inverse design of a quantum emitter light extractor <https://www.flexcompute.com/tidy3d/examples/notebooks/AdjointPlugin12LightExtractor>
+    Diffractive metasurface inverse design with topology optimization <https://www.flexcompute.com/tidy3d/examples/notebooks/AdjointPlugin13Metasurface>
+    Machine learning-based fabrication constraints for inverse design using PreFab <https://www.flexcompute.com/tidy3d/examples/notebooks/AdjointPlugin14PreFab>
diff --git a/docs/features/advanced.rst b/docs/features/advanced.rst
@@ -7,5 +7,5 @@ In this section, we demonstrate more advanced applications of Tidy3D. For exampl
     :class: example-notebook-toc
     :maxdepth: 1
 
-    ../../WaveguideBendSimulator
-    ../../SimpleModeSolverGUI
+    Build a simple waveguide bend simulator GUI <https://www.flexcompute.com/tidy3d/examples/notebooks/WaveguideBendSimulator>
+    Build a simple waveguide mode solver GUI <https://www.flexcompute.com/tidy3d/examples/notebooks/SimpleModeSolverGUI>