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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 649 375

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 328 84

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 314 83

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 255 148

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 149 93

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 119 21

Repositories

Showing 10 of 189 repositories
  • nixpack Public

    nix+spack = nixpack (spanix?)

    flatironinstitute/nixpack’s past year of commit activity
    Nix 46 MIT 4 1 5 Updated Mar 20, 2025
  • spack Public Forked from spack/spack

    A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

    flatironinstitute/spack’s past year of commit activity
    Python 2 2,397 0 8 Updated Mar 20, 2025
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 92 MIT 8 111 (1 issue needs help) 4 Updated Mar 20, 2025
  • nbfiddle Public
    flatironinstitute/nbfiddle’s past year of commit activity
    TypeScript 0 Apache-2.0 0 0 0 Updated Mar 19, 2025
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 53 Apache-2.0 8 21 0 Updated Mar 19, 2025
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 42 Apache-2.0 1 11 2 Updated Mar 19, 2025
  • ManifoldEM Public

    Python package for determination of conformational continua of macromolecules from single-particle cryo-EM data

    flatironinstitute/ManifoldEM’s past year of commit activity
    Python 12 GPL-3.0 2 5 0 Updated Mar 18, 2025
  • cppdlr Public

    Discrete Lehmann representation of imaginary time Green's functions

    flatironinstitute/cppdlr’s past year of commit activity
    C++ 11 Apache-2.0 6 1 0 Updated Mar 17, 2025
  • cephdu Public

    A ncdu-like TUI for the Ceph File System, using xattrs instead of crawling

    flatironinstitute/cephdu’s past year of commit activity
    Rust 2 MIT 0 9 0 Updated Mar 17, 2025
  • jupyter-remote-desktop-proxy Public Forked from jupyterhub/jupyter-remote-desktop-proxy

    Run a Linux Desktop on a JupyterHub

    flatironinstitute/jupyter-remote-desktop-proxy’s past year of commit activity
    Python 0 BSD-3-Clause 118 0 0 Updated Mar 17, 2025
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