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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 647 373

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 323 83

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 315 82

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 253 148

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 146 92

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 119 21

Repositories

Showing 10 of 187 repositories
  • MutantAutoMate Public
    flatironinstitute/MutantAutoMate’s past year of commit activity
    Python 0 2 4 3 Updated Mar 2, 2025
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 53 Apache-2.0 8 18 0 Updated Feb 28, 2025
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 91 MIT 8 103 (1 issue needs help) 3 Updated Feb 28, 2025
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    flatironinstitute/finufft’s past year of commit activity
    C++ 323 83 43 (3 issues need help) 8 Updated Feb 28, 2025
  • spack Public Forked from spack/spack

    A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

    flatironinstitute/spack’s past year of commit activity
    Python 2 2,384 0 11 Updated Feb 27, 2025
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 647 GPL-2.0 373 84 (1 issue needs help) 11 Updated Feb 27, 2025
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 42 Apache-2.0 1 11 1 Updated Feb 27, 2025
  • Cryo-EM-Heterogeneity-Challenge-1 Public

    The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge

    flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1’s past year of commit activity
    Jupyter Notebook 7 MIT 0 19 3 Updated Feb 27, 2025
  • nixpack Public

    nix+spack = nixpack (spanix?)

    flatironinstitute/nixpack’s past year of commit activity
    Nix 45 MIT 4 1 5 Updated Feb 26, 2025
  • CryoLike Public
    flatironinstitute/CryoLike’s past year of commit activity
    Python 7 MIT 4 6 7 Updated Feb 25, 2025
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