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0.7.0#51

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mmzdouc merged 16 commits into
mainfrom
0.6.5
Jan 29, 2026
Merged

0.7.0#51
mmzdouc merged 16 commits into
mainfrom
0.6.5

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@mmzdouc mmzdouc commented Jan 29, 2026

[0.7.0] 29-01-2026

Added

  • Additional ion adducts to annotate multicharged ions where the [M+H]+ is not visible (e.g. often the case with peptides)
  • Added Cytoscape-compatible ion identity network for additional output for adduct annotation
  • Quantitative phenotype: Added Spearman correlation, optionally with permutation test
  • Qualitative phenotype: Added optional testing (Welsh, Wilcoxon) to reduce spurious hits at low fold-changes (disabled by setting p_value_theshold to 0 or specifying "None").

Changed

  • Removed z-transformation from Pearson correlation in quantitative phenotype score calculation
  • For qualitative phenotype assigning, set p-value to "N/A" if not calculated (was 1 before)

@mmzdouc mmzdouc merged commit 18d7819 into main Jan 29, 2026
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@mmzdouc mmzdouc deleted the 0.6.5 branch January 29, 2026 19:09
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