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Add support for computing adsorption energies#113

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WardLT wants to merge 14 commits intomainfrom
add_adsorp
Draft

Add support for computing adsorption energies#113
WardLT wants to merge 14 commits intomainfrom
add_adsorp

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@WardLT WardLT commented Oct 6, 2023

Add a recipe which combines a molecule and surface, which involves both periodic boundary conditions and recipes which involve a molecule plus something else.

To do list:

  • Switch to using extxyz for communicating molecular structures (supports fixed atoms and PBC)
  • Build a data structure to describe a surface
  • Store molecule + surface structures in the MoleculeRecord
  • Create a recipe to generate surfaces
  • Test it for a few known cases

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