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feat(synthetic tasks)✨: Add support for integer sequence tasks in synthetic data generation #7

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merged 3 commits into from
Mar 27, 2025
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feat(synthetic tasks)✨: Add support for integer sequence tasks in synthetic data generation #7

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fd182b2
feat(synthetic tasks)✨: Add support for integer sequence tasks in syn…
ericmjl Mar 27, 2025
fd43524
refactor(synthetic)🔄: Refactor variable names for clarity and consist…
ericmjl Mar 27, 2025
297f071
fix(ci)🔧: Prevent PyPI package publishing on pull request events
ericmjl Mar 27, 2025
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1 change: 1 addition & 0 deletions .github/copilot-instructions.md
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Expand Up @@ -4,3 +4,4 @@ with respect to the code you write can be put here.

Tests should be written using pytest.
Only use test functions, don't use any classes.
To run tests, always run `pixi shell` first before running them.
1 change: 1 addition & 0 deletions .github/workflows/release-pypi-package.yaml
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Expand Up @@ -108,6 +108,7 @@ jobs:
uv build --sdist --wheel

- name: Publish package
if: github.event_name != 'pull_request'
uses: pypa/gh-action-pypi-publish@release/v1

- name: Push changes with tags
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54 changes: 54 additions & 0 deletions fast_seqfunc/__init__.py
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Expand Up @@ -8,6 +8,33 @@
from fast_seqfunc.core import predict, train_model
from fast_seqfunc.embedders import OneHotEmbedder, get_embedder
from fast_seqfunc.synthetic import (
create_content_ratio_task,
# Biological sequence tasks
create_g_count_task,
create_gc_content_task,
create_integer_classification_task,
create_integer_interaction_task,
create_integer_max_task,
create_integer_multiclass_task,
create_integer_nonlinear_composition_task,
create_integer_nonlinear_task,
create_integer_pattern_count_task,
create_integer_pattern_position_task,
create_integer_pattern_task,
create_integer_position_interaction_task,
create_integer_ratio_task,
# Specialized integer tasks
create_integer_sum_task,
create_interaction_generic_task,
create_interaction_task,
create_motif_count_task,
create_motif_position_task,
create_nonlinear_composition_generic_task,
create_nonlinear_composition_task,
create_pattern_count_task,
create_pattern_position_task,
# Generic task generators
create_token_count_task,
generate_integer_function_data,
generate_integer_sequences,
generate_random_sequences,
Expand All @@ -25,4 +52,31 @@
"generate_integer_sequences",
"generate_sequence_function_data",
"generate_integer_function_data",
# Generic task generators
"create_token_count_task",
"create_content_ratio_task",
"create_pattern_position_task",
"create_pattern_count_task",
"create_nonlinear_composition_generic_task",
"create_interaction_generic_task",
# Biological sequence tasks
"create_g_count_task",
"create_gc_content_task",
"create_motif_position_task",
"create_motif_count_task",
"create_nonlinear_composition_task",
"create_interaction_task",
# Specialized integer tasks
"create_integer_sum_task",
"create_integer_ratio_task",
"create_integer_pattern_position_task",
"create_integer_pattern_count_task",
"create_integer_nonlinear_composition_task",
"create_integer_position_interaction_task",
"create_integer_max_task",
"create_integer_pattern_task",
"create_integer_nonlinear_task",
"create_integer_interaction_task",
"create_integer_classification_task",
"create_integer_multiclass_task",
]
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