Skip to content

Issue 917: Create a markdown with the results of the synthetic recovery runs #1867

Issue 917: Create a markdown with the results of the synthetic recovery runs

Issue 917: Create a markdown with the results of the synthetic recovery runs #1867

name: "Synthetic validation check"
on:
push:
branches:
- main
- master
- develop
pull_request:
branches:
- main
- master
- develop
workflow_dispatch:
jobs:
synthetic-validation:
runs-on: macos-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@master
- name: Setup R
uses: r-lib/actions/setup-r@v2
- name: Setup pandoc
uses: r-lib/actions/setup-pandoc@v2
- uses: r-lib/actions/setup-r-dependencies@v2
with:
dependencies: NA
install-pandoc: false
extra-packages: |
here
scoringutils
loo
data.table
rstan
any::rmarkdown
matrixStats
local::.
- name: Run synthetic validation
run: |
Rscript -e '
source("inst/dev/recover-synthetic/rt.R")
source("inst/dev/recover-synthetic/eval_rt.R")
'
- name: Upload validation figures
uses: actions/upload-artifact@v4
with:
name: figures
retention-days: 5
path: inst/dev/figs
- name: Upload validation fits
uses: actions/upload-artifact@v4
with:
name: fits
retention-days: 5
path: synthetic.rds
- name: Render synthetic recovery md
run: |
rmarkdown::render("inst/dev/synthetic_recovery.md")
shell: Rscript {0}
- name: Build and generate
uses: live-codes/preview-in-livecodes@v1
with:
name: synthetic_recovery
path: inst/dev/synthetic_recovery.html
comment-markdown:
runs-on: macos-latest
permissions:
pull-requests: write
if: github.event.workflow_run.event == 'pull_request'
needs: synthetic-validation
steps:
- uses: live-codes/pr-comment-from-artifact@v1
with:
GITHUB_TOKEN: ${{ github.token }}