Networks

The first notebook is intended to point out how different are the layouts of the same graph, when the graph and its layout is defined/assigned by the Python libraries igraph, pygraphviz/graphviz, networkx.

1. Kamada-Kawai layout of a disconnected graph in igraph, graphviz and networkx
2. Kamada-Kawai layout of a connected graph in igraph, graphviz and networkx
3. Network of protein-protein interactions between schizophrenia genes
4. Flavor Network
5. Plotly viz of a 3d igraph graph defined from a scipy sparse adjacency matrix read from a MTX file