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Task/ada/add save action and editor config #45

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861a672
add editorconfig and rearrange code with save action
ad-ehealth Oct 14, 2025
b56e0a0
and documentation
ad-ehealth Oct 14, 2025
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701 changes: 701 additions & 0 deletions .editorconfig
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31 changes: 27 additions & 4 deletions README.md
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Expand Up @@ -6,10 +6,33 @@ To compile the CLI type `mvn package`

To run the CLI and get some help message, type `java -jar target/fhir-visualization-tool-1.0-SNAPSHOT-jar-with-dependencies.jar`

To execute the CLI on some test FHIR file, type `java -jar target/fhir-visualization-tool-1.0-SNAPSHOT-jar-with-dependencies.jar html src/test/resources/example.json` or `java -jar target/fhir-visualization-tool-1.0-SNAPSHOT-jar-with-dependencies.jar embed src/test/resources/example.json`
To execute the CLI on some test FHIR file, type `java -jar target/fhir-visualization-tool-1.0-SNAPSHOT-jar-with-dependencies.jar html src/test/resources/example.json` or
`java -jar target/fhir-visualization-tool-1.0-SNAPSHOT-jar-with-dependencies.jar embed src/test/resources/example.json`

To execute the CLI on some test FHIR file, type `java -jar target/fhir-visualization-tool-1.0-SNAPSHOT-jar-with-dependencies.jar html src/test/resources/example.json` or `java -jar target/fhir-visualization-tool-1.0-SNAPSHOT-jar-with-dependencies.jar embed src/test/resources/example.json`
To execute the CLI on some test FHIR file, type `java -jar target/fhir-visualization-tool-1.0-SNAPSHOT-jar-with-dependencies.jar html src/test/resources/example.json` or
`java -jar target/fhir-visualization-tool-1.0-SNAPSHOT-jar-with-dependencies.jar embed src/test/resources/example.json`

To directly open the generated html preview in a browser, use: ` java -jar target/fhir-visualization-tool-1.0-SNAPSHOT-jar-with-dependencies.jar -d html src/test/resources/example.json`
To directly open the generated html preview in a browser, use:
` java -jar target/fhir-visualization-tool-1.0-SNAPSHOT-jar-with-dependencies.jar -d html src/test/resources/example.json`

To extract the narratives from the CLI on some test FHIR file, type `java -jar target/fhir-visualization-tool-1.0-SNAPSHOT-jar-with-dependencies.jar html src/test/resources/example.json` or `java -jar target/fhir-visualization-tool-1.0-SNAPSHOT-jar-with-dependencies.jar extract src/test/resources/example.json`
To extract the narratives from the CLI on some test FHIR file, type
`java -jar target/fhir-visualization-tool-1.0-SNAPSHOT-jar-with-dependencies.jar html src/test/resources/example.json` or
`java -jar target/fhir-visualization-tool-1.0-SNAPSHOT-jar-with-dependencies.jar extract src/test/resources/example.json`

# Formating Code

## Configuring Save action

![saveAction.png](dev/saveActions.png)

Install plugin : https://plugins.jetbrains.com/plugin/22113-save-actions-x

Congifuration plugin ![configurationPlugin.png](dev/configurationSaveActions.png)

## Code Formatting

Configuration :

- Setting
- Editor > Code Style > Java
- select Project for the scheme ![selectScheme.png](dev/codeStyleConfiguration.png)
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342 changes: 169 additions & 173 deletions pom.xml
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@@ -1,174 +1,170 @@
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>be.fgov.ehealth</groupId>
<artifactId>fhir-visualization-tool</artifactId>
<packaging>jar</packaging>
<version>1.13</version>
<properties>
<!-- github server corresponds to entry in ~/.m2/settings.xml -->
<github.global.server>github</github.global.server>
</properties>
<distributionManagement>
<repository>
<id>internal.repo</id>
<name>Temporary Staging Repository</name>
<url>file://${project.build.directory}/mvn-repo</url>
</repository>
</distributionManagement>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<version>3.6.0</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.8.1</version>
<configuration>
<configuration>
<altDeploymentRepository>internal.repo::default::file://${project.build.directory}/mvn-repo</altDeploymentRepository>
</configuration>

<source>11</source>
<target>11</target>
<annotationProcessorPaths>
<path>
<groupId>info.picocli</groupId>
<artifactId>picocli-codegen</artifactId>
<version>4.6.2</version>
</path>
</annotationProcessorPaths>
<compilerArgs>
<arg>-Aproject=${project.groupId}/${project.artifactId}</arg>
</compilerArgs>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>single</goal>
</goals>
<configuration>
<archive>
<manifest>
<mainClass>be.fgov.ehealth.fhir.narrative.App</mainClass>
</manifest>
</archive>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>com.github.github</groupId>
<artifactId>site-maven-plugin</artifactId>
<version>0.12</version>
<configuration>
<message>Maven artifacts for ${project.version}</message> <!-- git commit message -->
<noJekyll>true</noJekyll> <!-- disable webpage processing -->
<outputDirectory>${project.build.directory}/mvn-repo</outputDirectory> <!-- matches distribution management repository url above -->
<branch>refs/heads/mvn-rep</branch> <!-- remote branch name -->
<includes><include>**/*</include></includes>
<repositoryName>laboResultVisualization</repositoryName> <!-- github repo name -->
<repositoryOwner>ehealthplatformstandards</repositoryOwner> <!-- github username -->
</configuration>
<executions>
<!-- run site-maven-plugin's 'site' target as part of the build's normal 'deploy' phase -->
<execution>
<goals>
<goal>site</goal>
</goals>
<phase>deploy</phase>
</execution>
</executions>
</plugin>
</plugins>
</build>
<name>trial</name>
<url>http://maven.apache.org</url>
<dependencies>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.13.2</version>
<scope>test</scope>
</dependency>
<!-- https://mvnrepository.com/artifact/org.fhir/ucum -->
<dependency>
<groupId>org.fhir</groupId>
<artifactId>ucum</artifactId>
<version>1.0.9</version>
</dependency>
<!-- https://mvnrepository.com/artifact/ca.uhn.hapi.fhir/hapi-fhir-base -->
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>7.6.1</version>
</dependency>
<!-- https://mvnrepository.com/artifact/ca.uhn.hapi.fhir/hapi-fhir-structures-r4 -->
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-r4</artifactId>
<version>7.6.1</version>
</dependency>
<!-- https://mvnrepository.com/artifact/ca.uhn.hapi.fhir/hapi-fhir-validation -->
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation</artifactId>
<version>7.6.1</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-collections4 -->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-collections4</artifactId>
<version>4.4</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.thymeleaf/thymeleaf -->
<dependency>
<groupId>org.thymeleaf</groupId>
<artifactId>thymeleaf</artifactId>
<version>3.1.1.RELEASE</version>
</dependency>
<!-- https://mvnrepository.com/artifact/com.github.ben-manes.caffeine/caffeine -->
<dependency>
<groupId>com.github.ben-manes.caffeine</groupId>
<artifactId>caffeine</artifactId>
<version>3.1.8</version>
</dependency>
<!-- https://mvnrepository.com/artifact/ca.uhn.hapi.fhir/hapi-fhir-caching-caffeine -->
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-caching-caffeine</artifactId>
<version>7.6.1</version>
</dependency>
<!-- https://mvnrepository.com/artifact/info.picocli/picocli -->
<dependency>
<groupId>info.picocli</groupId>
<artifactId>picocli</artifactId>
<version>4.7.3</version>
</dependency>
<!-- https://mvnrepository.com/artifact/com.squareup.okhttp3/okhttp -->
<dependency>
<groupId>com.squareup.okhttp3</groupId>
<artifactId>okhttp</artifactId>
<version>4.12.0</version>
</dependency>
<!-- https://mvnrepository.com/artifact/com.fasterxml.jackson.core/jackson-core -->
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-core</artifactId>
<version>2.17.1</version>
</dependency>


</dependencies>
<project xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://maven.apache.org/POM/4.0.0"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>be.fgov.ehealth</groupId>
<artifactId>fhir-visualization-tool</artifactId>
<packaging>jar</packaging>
<version>1.13</version>
<properties>
<!-- github server corresponds to entry in ~/.m2/settings.xml -->
<github.global.server>github</github.global.server>
</properties>
<distributionManagement>
<repository>
<id>internal.repo</id>
<name>Temporary Staging Repository</name>
<url>file://${project.build.directory}/mvn-repo</url>
</repository>
</distributionManagement>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<version>3.6.0</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.8.1</version>
<configuration>
<source>11</source>
<target>11</target>
<annotationProcessorPaths>
<path>
<groupId>info.picocli</groupId>
<artifactId>picocli-codegen</artifactId>
<version>4.6.2</version>
</path>
</annotationProcessorPaths>
<compilerArgs>
<arg>-Aproject=${project.groupId}/${project.artifactId}</arg>
</compilerArgs>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>single</goal>
</goals>
<configuration>
<archive>
<manifest>
<mainClass>be.fgov.ehealth.fhir.narrative.App</mainClass>
</manifest>
</archive>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>com.github.github</groupId>
<artifactId>site-maven-plugin</artifactId>
<version>0.12</version>
<configuration>
<message>Maven artifacts for ${project.version}</message> <!-- git commit message -->
<noJekyll>true</noJekyll> <!-- disable webpage processing -->
<outputDirectory>${project.build.directory}/mvn-repo</outputDirectory> <!-- matches distribution management repository url above -->
<branch>refs/heads/mvn-rep</branch> <!-- remote branch name -->
<includes>
<include>**/*</include>
</includes>
<repositoryName>laboResultVisualization</repositoryName> <!-- github repo name -->
<repositoryOwner>ehealthplatformstandards</repositoryOwner> <!-- github username -->
</configuration>
<executions>
<!-- run site-maven-plugin's 'site' target as part of the build's normal 'deploy' phase -->
<execution>
<goals>
<goal>site</goal>
</goals>
<phase>deploy</phase>
</execution>
</executions>
</plugin>
</plugins>
</build>
<name>trial</name>
<url>http://maven.apache.org</url>
<dependencies>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.13.2</version>
<scope>test</scope>
</dependency>
<!-- https://mvnrepository.com/artifact/org.fhir/ucum -->
<dependency>
<groupId>org.fhir</groupId>
<artifactId>ucum</artifactId>
<version>1.0.9</version>
</dependency>
<!-- https://mvnrepository.com/artifact/ca.uhn.hapi.fhir/hapi-fhir-base -->
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>7.6.1</version>
</dependency>
<!-- https://mvnrepository.com/artifact/ca.uhn.hapi.fhir/hapi-fhir-structures-r4 -->
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-r4</artifactId>
<version>7.6.1</version>
</dependency>
<!-- https://mvnrepository.com/artifact/ca.uhn.hapi.fhir/hapi-fhir-validation -->
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation</artifactId>
<version>7.6.1</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-collections4 -->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-collections4</artifactId>
<version>4.4</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.thymeleaf/thymeleaf -->
<dependency>
<groupId>org.thymeleaf</groupId>
<artifactId>thymeleaf</artifactId>
<version>3.1.1.RELEASE</version>
</dependency>
<!-- https://mvnrepository.com/artifact/com.github.ben-manes.caffeine/caffeine -->
<dependency>
<groupId>com.github.ben-manes.caffeine</groupId>
<artifactId>caffeine</artifactId>
<version>3.1.8</version>
</dependency>
<!-- https://mvnrepository.com/artifact/ca.uhn.hapi.fhir/hapi-fhir-caching-caffeine -->
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-caching-caffeine</artifactId>
<version>7.6.1</version>
</dependency>
<!-- https://mvnrepository.com/artifact/info.picocli/picocli -->
<dependency>
<groupId>info.picocli</groupId>
<artifactId>picocli</artifactId>
<version>4.7.3</version>
</dependency>
<!-- https://mvnrepository.com/artifact/com.squareup.okhttp3/okhttp -->
<dependency>
<groupId>com.squareup.okhttp3</groupId>
<artifactId>okhttp</artifactId>
<version>4.12.0</version>
</dependency>
<!-- https://mvnrepository.com/artifact/com.fasterxml.jackson.core/jackson-core -->
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-core</artifactId>
<version>2.17.1</version>
</dependency>
</dependencies>
</project>
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