Add CODA literature references.

eclipse · Oct 30, 2024 · c30489f · c30489f
1 parent bac5002
commit c30489f
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Showing 2 changed files with 53 additions and 1 deletion.
diff --git a/...org/eclipse/chemclipse/chromatogram/msd/filter/supplier/coda/settings/FilterSettings.java b/...org/eclipse/chemclipse/chromatogram/msd/filter/supplier/coda/settings/FilterSettings.java
@@ -1,5 +1,5 @@
 /*******************************************************************************
- * Copyright (c) 2011, 2018 Lablicate GmbH.
+ * Copyright (c) 2011, 2024 Lablicate GmbH.
  * 
  * All rights reserved.
  * This program and the accompanying materials are made available under the
@@ -11,14 +11,22 @@
  *******************************************************************************/
 package org.eclipse.chemclipse.chromatogram.msd.filter.supplier.coda.settings;
 
+import java.io.IOException;
+import java.util.Collections;
+import java.util.List;
+
 import org.eclipse.chemclipse.chromatogram.filter.settings.AbstractChromatogramFilterSettings;
 import org.eclipse.chemclipse.chromatogram.msd.filter.supplier.coda.preferences.PreferenceSupplier;
+import org.eclipse.chemclipse.logging.core.Logger;
+import org.eclipse.chemclipse.support.literature.LiteratureReference;
 import org.eclipse.chemclipse.support.settings.FloatSettingsProperty;
 
 import com.fasterxml.jackson.annotation.JsonProperty;
 
 public class FilterSettings extends AbstractChromatogramFilterSettings {
 
+	private static final Logger logger = Logger.getLogger(FilterSettings.class);
+	//
 	@JsonProperty(value = "Coda Threshold", defaultValue = "0.75f")
 	@FloatSettingsProperty(minValue = PreferenceSupplier.CODA_THRESHOLD_MIN_VALUE, maxValue = PreferenceSupplier.CODA_THRESHOLD_MAX_VALUE, step = 0.05f)
 	private float codaThreshold;
@@ -32,4 +40,22 @@ public void setCodaThreshold(float codaThreshold) {
 
 		this.codaThreshold = codaThreshold;
 	}
+
+	@Override
+	public List<LiteratureReference> getLiteratureReferences() {
+
+		return Collections.singletonList(createLiteratureReference("ac960435y.ris", "10.1021/ac960435y"));
+	}
+
+	private static LiteratureReference createLiteratureReference(String file, String doi) {
+
+		String content;
+		try {
+			content = new String(FilterSettings.class.getResourceAsStream(file).readAllBytes());
+		} catch(IOException | NullPointerException e) {
+			content = doi;
+			logger.warn(e);
+		}
+		return new LiteratureReference(content);
+	}
 }
diff --git a/...a/src/org/eclipse/chemclipse/chromatogram/msd/filter/supplier/coda/settings/ac960435y.ris b/...a/src/org/eclipse/chemclipse/chromatogram/msd/filter/supplier/coda/settings/ac960435y.ris
@@ -0,0 +1,26 @@
+
+
+
+
+TY  - JOUR
+T1  - A Noise and Background Reduction Method for Component Detection in Liquid Chromatography/Mass Spectrometry
+AU  - Windig, Willem
+AU  - Phalp, J. Martin
+AU  - Payne, Alan W.
+Y1  - 1996/01/01
+PY  - 1996
+DA  - 1996/01/01
+N1  - doi: 10.1021/ac960435y
+DO  - 10.1021/ac960435y
+T2  - Analytical Chemistry
+JF  - Analytical Chemistry
+JO  - Anal. Chem.
+SP  - 3602
+EP  - 3606
+VL  - 68
+IS  - 20
+PB  - American Chemical Society
+SN  - 0003-2700
+M3  - doi: 10.1021/ac960435y
+UR  - https://doi.org/10.1021/ac960435y
+ER  -