Add Savitzky-Golay smoothing literature references.

eclipse · Oct 30, 2024 · 21bf9d2 · 21bf9d2
1 parent d390a52
commit 21bf9d2
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Showing 2 changed files with 52 additions and 1 deletion.
diff --git a/...e/chromatogram/xxd/filter/supplier/savitzkygolay/settings/ChromatogramFilterSettings.java b/...e/chromatogram/xxd/filter/supplier/savitzkygolay/settings/ChromatogramFilterSettings.java
@@ -1,5 +1,5 @@
 /*******************************************************************************
- * Copyright (c) 2015, 2021 Lablicate GmbH.
+ * Copyright (c) 2015, 2024 Lablicate GmbH.
  *
  * All rights reserved. This program and the accompanying materials
  * are made available under the terms of the Eclipse Public License v1.0
@@ -13,8 +13,14 @@
  *******************************************************************************/
 package org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.savitzkygolay.settings;
 
+import java.io.IOException;
+import java.util.Collections;
+import java.util.List;
+
 import org.eclipse.chemclipse.chromatogram.filter.settings.AbstractChromatogramFilterSettings;
 import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.savitzkygolay.preferences.PreferenceSupplier;
+import org.eclipse.chemclipse.logging.core.Logger;
+import org.eclipse.chemclipse.support.literature.LiteratureReference;
 import org.eclipse.chemclipse.support.settings.IntSettingsProperty;
 import org.eclipse.chemclipse.support.settings.IntSettingsProperty.Validation;
 
@@ -24,6 +30,8 @@
 
 public class ChromatogramFilterSettings extends AbstractChromatogramFilterSettings {
 
+	private static final Logger logger = Logger.getLogger(ChromatogramFilterSettings.class);
+	//
 	@JsonProperty(value = "Order", defaultValue = "2")
 	@JsonPropertyDescription(value = "Order p of the polynomial to be fitted: Integer in the range from 2 to 5")
 	@IntSettingsProperty(minValue = PreferenceSupplier.MIN_ORDER, maxValue = PreferenceSupplier.MAX_ORDER)
@@ -64,4 +72,22 @@ public void setWidth(int width) {
 
 		this.width = width;
 	}
+
+	@Override
+	public List<LiteratureReference> getLiteratureReferences() {
+
+		return Collections.singletonList(createLiteratureReference("achs_ancham36_1627.ris", "10.1021/ac60214a047"));
+	}
+
+	private static LiteratureReference createLiteratureReference(String file, String doi) {
+
+		String content;
+		try {
+			content = new String(ChromatogramFilterSettings.class.getResourceAsStream(file).readAllBytes());
+		} catch(IOException | NullPointerException e) {
+			content = doi;
+			logger.warn(e);
+		}
+		return new LiteratureReference(content);
+	}
 }
diff --git a/...chemclipse/chromatogram/xxd/filter/supplier/savitzkygolay/settings/achs_ancham36_1627.ris b/...chemclipse/chromatogram/xxd/filter/supplier/savitzkygolay/settings/achs_ancham36_1627.ris
@@ -0,0 +1,25 @@
+
+
+
+
+TY  - JOUR
+T1  - Smoothing and Differentiation of Data by Simplified Least Squares Procedures.
+AU  - Savitzky, Abraham.
+AU  - Golay, M. J. E.
+Y1  - 1964/07/01
+PY  - 1964
+DA  - 1964/07/01
+N1  - doi: 10.1021/ac60214a047
+DO  - 10.1021/ac60214a047
+T2  - Analytical Chemistry
+JF  - Analytical Chemistry
+JO  - Anal. Chem.
+SP  - 1627
+EP  - 1639
+VL  - 36
+IS  - 8
+PB  - American Chemical Society
+SN  - 0003-2700
+M3  - doi: 10.1021/ac60214a047
+UR  - https://doi.org/10.1021/ac60214a047
+ER  -