transomics2cytoscape-py

Automation of the transomics 2.5D network visualization

Install

pip install git+https://github.com/ecell/transomics2cytoscape-py

Run

1. Install and launch Cytoscape.
2. Install KEGGscape App on Cytoscape App Manager.
3. Run Python interactive shell with python command.
4. Run the command in the Python interactive shell.

from transomics2cytoscape import transomics2cytoscape as t2c
t2c.create3Dnetwork("https://raw.githubusercontent.com/ecell/transomics2cytoscape/master/inst/extdata/usecase1/yugi2014.tsv")