-
-
Notifications
You must be signed in to change notification settings - Fork 69
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge branch 'main' into kruskal-wallis
- Loading branch information
Showing
13 changed files
with
210 additions
and
276 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,111 @@ | ||
| # report_table ----------------- | ||
|
|
||
| .report_table_fisher <- function(table_full, effsize) { | ||
| table_full <- cbind(table_full, attributes(effsize)$table) | ||
| list(table = NULL, table_full = table_full) | ||
| } | ||
|
|
||
|
|
||
| # report_effectsize --------------------- | ||
|
|
||
| .report_effectsize_fisher <- function(x, table, dot_args, rules = "funder2019") { | ||
| args <- c(list(x), dot_args) | ||
| table <- do.call(effectsize::effectsize, args) | ||
| ci <- attributes(table)$ci | ||
| estimate <- names(table)[1] | ||
| rules <- ifelse(is.null(dot_args$rules), rules, dot_args$rules) | ||
|
|
||
| args <- list(table, rules = rules, dot_args) | ||
| interpretation <- do.call(effectsize::interpret, args)$Interpretation | ||
| rules <- .text_effectsize(attr(attr(interpretation, "rules"), "rule_name")) | ||
|
|
||
| if (estimate == "Cramers_v_adjusted") { | ||
| main <- paste0("Adjusted Cramer's v = ", insight::format_value(table[[estimate]])) | ||
| } else if (estimate == "Tschuprows_t") { | ||
| main <- paste0("Tschuprow's t = ", insight::format_value(table[[estimate]])) | ||
| } else if (estimate == "Tschuprows_t_adjusted") { | ||
| main <- paste0("Adjusted Tschuprow's t = ", insight::format_value(table[[estimate]])) | ||
| } else if (estimate == "Pearsons_c") { | ||
| main <- paste0("Pearson's c = ", insight::format_value(table[[estimate]])) | ||
| } else if (estimate == "phi_adjusted") { | ||
| main <- paste0("Adjusted Phi = ", insight::format_value(table[[estimate]])) | ||
| } else if (estimate == "Cohens_h") { | ||
| main <- paste0("Cohen's h = ", insight::format_value(table[[estimate]])) | ||
| } else if (estimate == "Odds_ratio") { | ||
| main <- paste0("Odds ratio = ", insight::format_value(table[[estimate]])) | ||
| } else if (estimate == "Ris_kratio") { | ||
| main <- paste0("Risk ratio = ", insight::format_value(table[[estimate]])) | ||
| } else if (estimate == "cohens_h") { | ||
| main <- paste0("Cohen's w = ", insight::format_value(table[[estimate]])) | ||
| } else { | ||
| main <- paste0(estimate, " = ", insight::format_value(table[[estimate]])) | ||
| } | ||
|
|
||
| statistics <- paste0( | ||
| main, | ||
| ", ", | ||
| insight::format_ci(table$CI_low, table$CI_high, ci) | ||
| ) | ||
|
|
||
| table <- datawizard::data_rename( | ||
| as.data.frame(table), | ||
| c("CI_low", "CI_high"), | ||
| paste0(estimate, c("_CI_low", "_CI_high")) | ||
| ) | ||
|
|
||
| table <- table[c(estimate, paste0(estimate, c("_CI_low", "_CI_high")))] | ||
|
|
||
| list( | ||
| table = table, statistics = statistics, interpretation = interpretation, | ||
| rules = rules, ci = ci, main = main | ||
| ) | ||
| } | ||
|
|
||
| # report_model ---------------------------- | ||
|
|
||
| .report_model_fisher <- function(x, table) { | ||
| vars_full <- paste0(names(attributes(x$observed)$dimnames), collapse = " and ") | ||
|
|
||
| text <- paste0( | ||
| trimws(x$method), | ||
| " testing the association between the variables of the ", | ||
| x$data.name, " dataset " | ||
| ) | ||
|
|
||
| text | ||
| } | ||
|
|
||
| chi2_type <- function(x) { | ||
| if (grepl("probabilities", x$method, fixed = TRUE)) { | ||
| out <- "probabilities" | ||
| } else if (grepl("Pearson", x$method, fixed = TRUE)) { | ||
| out <- "pearson" | ||
| } else if (grepl("Fisher", x$method, fixed = TRUE)) { | ||
| out <- "fisher" | ||
| } | ||
| out | ||
| } | ||
|
|
||
| .report_parameters_fisher <- function(table, stats, effsize, ...) { | ||
| text_full <- paste0( | ||
| "statistically ", | ||
| effectsize::interpret_p(table$p, rules = "default"), | ||
| ", and ", | ||
| attributes(effsize)$interpretation, | ||
| " (", | ||
| stats, | ||
| ")" | ||
| ) | ||
|
|
||
| text_short <- paste0( | ||
| "statistically ", | ||
| effectsize::interpret_p(table$p, rules = "default"), | ||
| ", and ", | ||
| attributes(effsize)$interpretation, | ||
| " (", | ||
| summary(stats), | ||
| ")" | ||
| ) | ||
|
|
||
| list(text_short = text_short, text_full = text_full) | ||
| } |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.