pyforge final project

1. Start application

To start application run following command:

docker-compose up -d

2. Using application

2.1 Creating aliases

After starting you should create alias to more friendly interaction with app:

For unix users:

alias pyforge='docker exec my_app python ./project/main.py'

For windows users:

doskey pyforge = docker exec my_app python ./project/main.py $*

2.2 Executing commands

To get info about compound from www.ebi.ac.uk and send it to database:

pyforge --get_info {compound}

To show all compounds from database:

pyforge --print

Running tests

To run tests with pytest you should have pytest and pytest-mock installed. If they are not installed install them with following commands in your virtual environment:

pip install pytest pytest-mock

Then run:

pytest project/tests

Logs

logs will be saved in project/logs