Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Richard test #56

Open
wants to merge 31 commits into
base: dev
Choose a base branch
from
Open
Changes from all commits
Commits
Show all changes
31 commits
Select commit Hold shift + click to select a range
7fb26ee
Update README.md
sclan May 21, 2024
47b09cf
testing
davisfeng70 Dec 9, 2023
0889b65
updated README
davisfeng70 Dec 9, 2023
b3d6d20
added hourly restart option
davisfeng70 Dec 11, 2023
8734bfb
fixed hourly update task
davisfeng70 Dec 21, 2023
eea9719
fixed issue with hourly_restart option
davisfeng70 Dec 22, 2023
b1e8076
added check to remove trailing slash from directory variables. update…
davisfeng70 Jan 9, 2024
717caa0
added monitored_diretories example
davisfeng70 Jan 12, 2024
5f96d78
fixed doc, corrected cron_log_folder in Example playbook
davisfeng70 Feb 24, 2024
e9b0150
added missing print call
davisfeng70 Feb 24, 2024
954bc53
changed exit to use time vs previous iteration count
davisfeng70 Feb 24, 2024
bafbb11
added message for start time
davisfeng70 Feb 24, 2024
f861c10
fixed adding start logging
davisfeng70 Feb 24, 2024
60bb7d8
adding arguments to control UA logging
davisfeng70 Feb 25, 2024
f5fe6c5
removed waiting period check for incomplete uploads
davisfeng70 Feb 25, 2024
a0047c3
updated comment
davisfeng70 Feb 25, 2024
58b8a90
fixed optional ua args for logging
davisfeng70 Feb 26, 2024
182a86c
changed hourly restart logic
davisfeng70 Mar 12, 2024
32b1db4
corrected novaseq conditional
davisfeng70 Mar 19, 2024
113f70d
added logging for number of tar files and size for this upload
davisfeng70 Mar 25, 2024
efbf73b
adding test samples
davisfeng70 Mar 27, 2024
8634aaa
updated instructions and test.yml to work directly with run folders i…
davisfeng70 Apr 16, 2024
b9b4cee
XVG-8595 trigger hourly interrupt when too many modified files are fo…
truongle1501 May 8, 2024
38fa064
XVG-8584 resillient log (#54)
ptdtan May 8, 2024
bdde98f
print version
davisfeng70 May 14, 2024
ef41098
Add utils ( TER-84 )
sclan Jul 22, 2024
86bca84
add timestamp to log filename when copying to remote location
davisfeng70 Jul 29, 2024
b855593
added verbose flag to cron flock
davisfeng70 Jul 29, 2024
4ebebcc
removed excessive logging every file in a tar file
davisfeng70 Jul 29, 2024
985098f
log date in dx-stream_cron
davisfeng70 Aug 13, 2024
7df5fd6
Merge branch 'dev' of https://github.com/dnanexus/dx-streaming-upload…
bomquangia Aug 13, 2024
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 2 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,8 @@ The dx-streaming-upload Ansible role packages the streaming upload module for in

Instruments that this module support include the Illumina MiSeq, NextSeq, HiSeq-2500, HiSeq-4000, HiSeq-X, Novaseq.

The dx-streaming-upload tool is experimental and not yet productized. Use it at your own risk.

Role Variables
--------------
- `mode`: `{deploy, debug}` In the *debug* mode, monitoring cron job is triggered every minute; in *deploy mode*, monitoring cron job is triggered every hour.
Expand Down