tutlist

List of Tutorials

Plans

1. Mitolin plan - version 0 (mitolinplan-v0.md)

Organization

1. Directory structure (dir-struct.md)
2. Github member privileges and branch protection(mem-priv-branch-protect.md)

Data acquisition

1. Access data - LaBrock (accdata-labrock.md)
2. Download flu fasta files (dwnld-flu-fa.md)

GATK

1. Install gatk (install-gatk.md)
2. vcf to fasta with FARM (vcf2fasta.md)

Machine Learning

1. Determine cell lineage relationships w/ machine learning (ml.md)

Operations

1. Bash snippets (bash-snippets.md)
   • useful code for moving files or making lists of files using the command line
2. SSH Key Generation (ssh-keygen.md)