Revision#3

Merged

marta-seq merged 31 commits into

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Apr 12, 2026

Commits on Jan 25, 2026

add notebook using PENGUIN to preprocess IMC and IF
marta-seq
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add notebook that explores Cosmx agridgene vs reference. start with Xenium
marta-seq
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Commits on Jan 26, 2026

update notebook that explores agridgene vs reference. Xenium
marta-seq
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update notebook that explores agridgene vs reference. Xenium
marta-seq
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Commits on Feb 4, 2026

update on quantitative xenium
marta-seq
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Commits on Feb 6, 2026

add quantitative validation for cell validation
marta-seq
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Commits on Feb 7, 2026

add quantitative validation for cell validatio changesn
marta-seq
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Commits on Feb 9, 2026

refactor of quant analysis. fix cosmx and IF
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Commits on Feb 10, 2026

update on validation code for Xeniuma nd CosMx
marta-seq
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Commits on Feb 12, 2026

Commits on Feb 13, 2026

fix the cell phenotyping overlap with gridgene masks
marta-seq
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Commits on Feb 18, 2026

add plot on Xenium part
marta-seq
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Commits on Feb 23, 2026

Commits on Mar 11, 2026

orthogonal validation cell segmentation
marta-seq
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Commits on Apr 6, 2026

add new notebook on gd xenium validation - small fixes
marta-seq
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Commits on Apr 11, 2026

clean and improve images orthogonal ipynb
marta-seq
committed