Stars
COBRApy is a package for constraint-based modeling of metabolic networks.
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
Sequence correction provided by ONT Research
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
A tool for generating consensus long-read assemblies for bacterial genomes
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
NCBI Prokaryotic Genome Annotation Pipeline
Research release basecalling models and configurations
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.