COBRApy is a package for constraint-based modeling of metabolic networks.

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

Sequence correction provided by ONT Research

Oxford Nanopore's Basecaller

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Genome assembly evaluation tool

Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates

A tool for generating consensus long-read assemblies for bacterial genomes

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Reorients assembled microbial sequences

NCBI Prokaryotic Genome Annotation Pipeline

Research release basecalling models and configurations

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

⚡ ♒ Rapid prokaryotic genome annotation