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6 changes: 3 additions & 3 deletions docs/geniml/tutorials/create-consensus-peaks.md
Original file line number Diff line number Diff line change
Expand Up @@ -38,12 +38,12 @@ Or we can import it directly into Python:
```
from geniml.universe.cc_universe import cc_universe

cc_universe("tests/consenus/coverage/all_core.bw",
cc_universe("tests/consenus/coverage/",
file_out="tests/consenus/universe/universe.bed")
```

Depending on the task we can also smooth the output universe by setting `--merge`
flag with the distance beloved witch peaks should be merged together and
flag with the distance beyond which peaks should be merged together and
`--filter-size` with minimum size of peak that should be part of the universe. We can also not use the maximum likelihood cut-off and instead of it use user defined cutoff. For that we have to set `--cutoff` . If we set it to 1 we get union universe, and when to number of files we will get intersection universe.

## Coverage cutoff flexible universe
Expand All @@ -64,7 +64,7 @@ Or we can import it directly into python:
```
from geniml.universe.ccf_universe import ccf_universe

ccf_universe("tests/consenus/coverage/all_core.bw",
ccf_universe("tests/consenus/coverage/",
file_out="tests/consenus/universe/universe.bed")
```

Expand Down