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@czi-ai

Chan Zuckerberg Initiative - AI

Finding new ways to leverage technology, community-driven solutions, and collaboration to accelerate progress in science and education.
README.md

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BUILDING A BETTER FUTURE FOR EVERYONE

We’re on an ambitious mission to solve some of society’s toughest challenges — from eradicating disease to improving education and addressing the needs of our local communities.

Code of Conduct

This project adheres to the Contributor Covenant code of conduct. By participating, you are expected to uphold this code. Please report unacceptable behavior to opensource@chanzuckerberg.com.

Reporting Security Issues

If you believe you have found a security issue, please responsibly disclose by contacting us at security@chanzuckerberg.com.

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  1. scGenePT scGenePT Public

    Jupyter Notebook 33 9

  2. sub-cell-embed sub-cell-embed Public

    Forked from CellProfiling/subcell-embed

    Python 6

Repositories

Showing 10 of 18 repositories
  • scldm Public

    single-cell latent diffusion model

    czi-ai/scldm's past year of commit activity
    Python 63 MIT 8 2 2 Updated Sep 28, 2026
  • variantformer Public

    VariantFormer: A hierarchical transformer integrating DNA sequences with genetic variations

    czi-ai/variantformer's past year of commit activity
    Python 34 MIT 6 10 3 Updated May 3, 2026
  • FlexTPP Public

    Framework for easy mixed-type autoregressive models

    czi-ai/FlexTPP's past year of commit activity
    Python 4 MIT 2 2 0 Updated Mar 25, 2026
  • structural_identifiability Public

    Locatello residency repo: Statistical and structural identifiability in representation learning @ ICLR 2026

    czi-ai/structural_identifiability's past year of commit activity
    Python 1 0 0 0 Updated Mar 20, 2026
  • cell-mnn Public

    Cell-MNN

    czi-ai/cell-mnn's past year of commit activity
    Python 8 MIT 1 0 0 Updated Feb 24, 2026
  • GREmLN Public

    A Cellular Regulatory Network-Aware Transcriptomics Foundation Model

    czi-ai/GREmLN's past year of commit activity
    Jupyter Notebook 38 MIT 11 2 1 Updated Dec 18, 2025
  • oc-guidance Public

    Official Implementation of the paper "Variational Control for Guidance in Diffusion Models" accepted at ICML'25

    czi-ai/oc-guidance's past year of commit activity
    Python 20 MIT 1 2 8 Updated Dec 5, 2025
  • rbio Public

    Public repo for rbio, a biologically-informed reasoning model trained on virtual cell models as verifiers

    czi-ai/rbio's past year of commit activity
    Python 144 21 1 0 Updated Nov 24, 2025
  • DrugMechCounterfactuals Public

    Drug Mechanisms Counterfactuals dataset for evaluating LLMs

    czi-ai/DrugMechCounterfactuals's past year of commit activity
    Python 6 MIT 1 0 0 Updated Nov 13, 2025
  • transcriptformer Public
    czi-ai/transcriptformer's past year of commit activity
    Jupyter Notebook 166 MIT 26 5 2 Updated Nov 6, 2025
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