nanovar-v1.8.3

• Patch to add pandas dependency

nanovar-v1.8.2

• Added '--sv_bam_out' option to output SV-supporting reads in BAM format, with SV-IDs labeled on the 'nv' tag

nanovar-v1.8.1

• Patch to restrict NumPy version to <2.0.0 for TF compatibility

nanovar-v1.8.0

* Migrated to pyproject.toml and removed setup.py
* Increased default minimum SV read coverage from 2 to 4
* Modified nanoinsight installation to manual and optional (for conda compatibility)
* Removed "htmlark" package requirement (for conda compatibility)
* Removed "progress" package requirement
* Fixed for #89 bedtools getfasta bug
* Fixed y-axis log scale bug in report
* Added samtools and minimap2 path in logs
* Added version in stdout logs

nanovar-v1.7.0

* Added alternative sequence for INS and DEL in VCF
* Added CRAM input support
* Modified SV ID format with addition of SV type, from nv_SV?-????? to NV.INS.SV?-?????
* SV size now takes the median size amongst clustered reads, instead of the largest

nanovar-v1.6.2

See CHANGELOG.txt for changes

nanovar-v1.6.0

See CHANGELOG.txt for changes

nanovar-v1.5.1

See CHANGELOG.txt for changes

nanovar-v1.5.0

See CHANGELOG.txt for changes

nanovar-v1.4.1

See CHANGELOG.txt for changes