Initialize ProSe repository with modular integration framework for Prose2, File Organizer, and Jules

[Copilot]

Establishes ProSe as the integration layer for Prose components (Prose2, File Organizer) and Jules AI workspace assistant.

Structure

• Modular architecture: Separate modules (src/jules/, src/prose2/, src/file-organizer/) with consistent initialization patterns
• Main entry point (src/index.js): Orchestrates integration lifecycle, handles graceful degradation when services unavailable
• Configuration system: Environment-based secrets (.env) + JSON config (config/default.json) for feature toggles and rules

Jules Integration

Complete API key management via environment variables:

import ProSe from './src/index.js';

const prose = new ProSe();
await prose.initialize();  // Auto-detects JULES_API_KEY from .env

const jules = prose.getJules();
if (jules?.isAvailable()) {
  const result = await jules.query('Analyze workspace context');
}

Key features:

• Workspace context retrieval
• Query interface for AI assistance
• Works without API key (feature disabled, no errors)

Documentation

• API.md: Complete method signatures and return types
• JULES.md: API key acquisition, troubleshooting, workspace setup
• SETUP_SUMMARY.md: Repository overview and next steps for Prose2/File Organizer implementation

Security

• Environment-based secrets (.env gitignored, .env.example template provided)
• No hardcoded credentials
• CodeQL scan: 0 vulnerabilities

Examples

Working code in examples/ demonstrates integration patterns for immediate use.

Original prompt

I'm trying to make ProSe a repository so I can begin the integration from parts of the Prose2 and Prose file organizer is this the right thing? also I'd like to integrate Jules into my workspace and have an API key if we need it

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