init project (#2)

* init

* update

* not ready

* add makefile

* lint

* not ready

* fix

* fix

* good

---------

Co-authored-by: TANG ZHIXIONG <[email protected]>

.clang-format

@@ -0,0 +1,5 @@
+BasedOnStyle: Google
+AccessModifierOffset: -2
+ColumnLimit: 120
+IndentWidth: 4
+Language: Cpp

.pre-commit-config.yaml

@@ -24,9 +24,7 @@ repos:
   - id: check-added-large-files
   - id: check-case-conflict
   - id: check-merge-conflict
-  - id: check-symlinks
   - id: check-yaml
-    exclude: ^conda\.recipe/meta\.yaml$
   - id: debug-statements
   - id: end-of-file-fixer
   - id: mixed-line-ending
@@ -47,7 +45,7 @@ repos:
   rev: v1.5.5
   hooks:
   - id: remove-tabs
-    exclude: ^(docs)
+    exclude: ^(docs|Makefile)
 
 # CMake formatting
 - repo: https://github.com/cheshirekow/cmake-format-precommit
@@ -58,8 +56,7 @@ repos:
     types: [file]
     files: (\.cmake|CMakeLists.txt)(.in)?$
 
-# Suggested hook if you add a .clang-format file
-# - repo: https://github.com/pre-commit/mirrors-clang-format
-#  rev: v13.0.0
-#  hooks:
-#  - id: clang-format
+- repo: https://github.com/pre-commit/mirrors-clang-format
+  rev: v13.0.0
+  hooks:
+  - id: clang-format

CMakeLists.txt

@@ -1,26 +1,36 @@
-# Require CMake 3.15+ (matching scikit-build-core) Use new versions of all
-# policies up to CMake 3.27
 cmake_minimum_required(VERSION 3.15...3.27)
 
-# Scikit-build-core sets these values for you, or you can just hard-code the
-# name and version.
 project(
   ${SKBUILD_PROJECT_NAME}
   VERSION ${SKBUILD_PROJECT_VERSION}
   LANGUAGES CXX)
 
-# Find the module development requirements (requires FindPython from 3.17 or
-# scikit-build-core's built-in backport)
+set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
+set(CMAKE_CXX_STANDARD 14)
+
+# set(CMAKE_BUILD_TYPE "Debug")
+if(NOT CMAKE_BUILD_TYPE OR CMAKE_BUILD_TYPE STREQUAL "")
+  set(CMAKE_BUILD_TYPE
+      "Release"
+      CACHE STRING "" FORCE)
+  message(STATUS "Set build type to default: ${CMAKE_BUILD_TYPE}")
+else()
+  message(STATUS "Your build type: ${CMAKE_BUILD_TYPE}")
+endif()
+if(CMAKE_BUILD_TYPE STREQUAL "Debug")
+  set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -O0 -ggdb")
+  set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -O0 -ggdb")
+elseif(CMAKE_BUILD_TYPE STREQUAL "Release")
+  set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -O3")
+  set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -O3")
+endif()
+
 find_package(Python REQUIRED COMPONENTS Interpreter Development.Module)
 find_package(pybind11 CONFIG REQUIRED)
 
-# Add a library using FindPython's tooling (pybind11 also provides a helper like
-# this)
 python_add_library(_core MODULE src/main.cpp WITH_SOABI)
 target_link_libraries(_core PRIVATE pybind11::headers)
 
-# This is passing in the version as a define just as an example
 target_compile_definitions(_core PRIVATE VERSION_INFO=${PROJECT_VERSION})
 
-# The install directory is the output (wheel) directory
-install(TARGETS _core DESTINATION scikit_build_example)
+install(TARGETS _core DESTINATION fast_viterbi)

Makefile

@@ -0,0 +1,105 @@
+PROJECT_SOURCE_DIR ?= $(abspath ./)
+PROJECT_NAME ?= $(shell basename $(PROJECT_SOURCE_DIR))
+NUM_JOBS ?= 8
+
+all:
+	@echo nothing special
+
+lint:
+	pre-commit run -a
+lint_install:
+	pre-commit install
+.PHONY: lint
+
+reset_submodules:
+	git submodule update --init --recursive
+
+clean:
+	rm -rf build *.egg-info dist
+force_clean:
+	docker run --rm -v `pwd`:`pwd` -w `pwd` -it alpine/make make clean
+
+pytest:
+	python3 -m pip install pytest numpy
+	pytest tests # --capture=tee-sys
+.PHONY: test pytest
+
+docs_build:
+	mkdocs build
+docs_serve:
+	mkdocs serve -a 0.0.0.0:8088
+
+DOCKER_TAG_WINDOWS ?= ghcr.io/cubao/build-env-windows-x64:v0.0.1
+DOCKER_TAG_LINUX ?= ghcr.io/cubao/build-env-manylinux2014-x64:v0.0.4
+DOCKER_TAG_MACOS ?= ghcr.io/cubao/build-env-macos-arm64:v0.0.1
+
+test_in_win:
+	docker run --rm -w `pwd` -v `pwd`:`pwd` -v `pwd`/build/win:`pwd`/build -it $(DOCKER_TAG_WINDOWS) bash
+test_in_mac:
+	docker run --rm -w `pwd` -v `pwd`:`pwd` -v `pwd`/build/mac:`pwd`/build -it $(DOCKER_TAG_MACOS) bash
+test_in_linux:
+	docker run --rm -w `pwd` -v `pwd`:`pwd` -v `pwd`/build/linux:`pwd`/build -it $(DOCKER_TAG_LINUX) bash
+
+DEV_CONTAINER_NAME ?= $(USER)_$(subst /,_,$(PROJECT_NAME)____$(PROJECT_SOURCE_DIR))
+DEV_CONTAINER_IMAG ?= $(DOCKER_TAG_LINUX)
+test_in_dev_container:
+	docker ps | grep $(DEV_CONTAINER_NAME) \
+		&& docker exec -it $(DEV_CONTAINER_NAME) bash \
+		|| docker run --rm --name $(DEV_CONTAINER_NAME) \
+			--network host --security-opt seccomp=unconfined \
+			-v `pwd`:`pwd` -w `pwd` -it $(DEV_CONTAINER_IMAG) bash
+
+
+PYTHON ?= python3
+build:
+	$(PYTHON) -m pip install scikit_build_core pyproject_metadata pathspec pybind11
+	CMAKE_BUILD_PARALLEL_LEVEL=$(NUM_JOBS) $(PYTHON) -m pip install --no-build-isolation -Ceditable.rebuild=true -Cbuild-dir=build -ve.
+python_install:
+	$(PYTHON) -m pip install . --verbose
+python_wheel:
+	$(PYTHON) -m pip wheel . -w dist --verbose
+python_build: python_wheel
+python_sdist:
+	$(PYTHON) -m pip sdist . --verbose
+python_test: pytest
+.PHONY: build
+
+# conda create -y -n py37 python=3.7
+# conda create -y -n py38 python=3.8
+# conda create -y -n py39 python=3.9
+# conda create -y -n py310 python=3.10
+# conda env list
+python_build_py37:
+	PYTHON=python conda run --no-capture-output -n py37 make python_build
+python_build_py38:
+	PYTHON=python conda run --no-capture-output -n py38 make python_build
+python_build_py39:
+	PYTHON=python conda run --no-capture-output -n py39 make python_build
+python_build_py310:
+	PYTHON=python conda run --no-capture-output -n py310 make python_build
+python_build_all: python_build_py37 python_build_py38 python_build_py39 python_build_py310
+python_build_all_in_linux:
+	docker run --rm -w `pwd` -v `pwd`:`pwd` -v `pwd`/build/linux:`pwd`/build -it $(DOCKER_TAG_LINUX) make python_build_all
+	make repair_wheels && rm -rf dist/*.whl && mv wheelhouse/*.whl dist && rm -rf wheelhouse
+python_build_all_in_macos: python_build_py38 python_build_py39 python_build_py310
+python_build_all_in_windows: python_build_all
+
+repair_wheels:
+	python -m pip install auditwheel # sudo apt install patchelf, conda install -c conda-forge patchelf
+	ls dist/*-linux_x86_64.whl | xargs -n1 auditwheel repair --plat manylinux2014_x86_64
+	rm -rf dist/*-linux_x86_64.whl && cp wheelhouse/*.whl dist && rm -rf wheelhouse
+
+pypi_remote ?= pypi
+upload_wheels:
+	python -m pip install twine
+	twine upload dist/fast_viterbi-*.whl -r $(pypi_remote)
+
+tar.gz:
+	tar -cvz --exclude .git -f ../$(PROJECT_NAME).tar.gz .
+	ls -alh ../$(PROJECT_NAME).tar.gz
+
+# https://stackoverflow.com/a/25817631
+echo-%  : ; @echo -n $($*)
+Echo-%  : ; @echo $($*)
+ECHO-%  : ; @echo $* = $($*)
+echo-Tab: ; @echo -n '    '