Files for Manuscripts

High frequency of shared clonotypes in human B cell receptor repertoires

• Source code (Recombinator and additional scripts)

Zenodo Release

• https://zenodo.org/record/2537075#.XnzO8IhKiUk

Adaptive Biotechnologies data sets (FASTA)

• HIP2

Synthetic data sets created using Recombinator

• Full set of synthetic clonotypes for HIP1 (broken down by CDR3 length)

• Full set of synthetic clonotypes for HIP2 (broken down by CDR3 length)

• Full set of synthetic clonotypes for HIP3 (broken down by CDR3 length)

• 500 subsampled heavy chain V3DJ clonotypes for HIP1

• 500 subsampled heavy chain V3DJ clonotypes for HIP2

• 500 subsampled heavy chain V3DJ clonotypes for HIP3

• 100 sampled heavy chain V3DJ clonotypes for CORD1, CORD2 and CORD3

FASTQ contig files for HIP1, HIP2 and HIP3

HIP1

• Donor01+IGH-Clonotypes.fasta.gz
• Donor01+IGK-SomaticVariants.fasta.gz
• Donor01+IGL-SomaticVariants.fasta.gz

HIP2

• Donor02+IGH-Clonotypes.fasta.gz
• Donor02+IGK-SomaticVariants.fasta.gz
• Donor02+IGL-SomaticVariants.fasta.gz

HIP3

• Donor03+IGH-Clonotypes.fasta.gz
• Donor03+IGK-SomaticVariants.fasta.gz
• Donor03+IGL-SomaticVariants.fasta.gz

All other data is available upon request.