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| Original file line number | Diff line number | Diff line change |
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| Package: ruminate | ||
| Title: A Pharmacometrics Data Transformation and Analysis Tool | ||
| Version: 0.1.1 | ||
| Authors@R: | ||
| person("John", "Harrold", , "[email protected]", role = c("aut", "cre"), | ||
| comment = c(ORCID = "0000-0003-2052-4373")) | ||
| Description: Exploration of pharmacometrics data involves both general tools (transformation and plotting) and specific techniques (non-compartmental analysis). This kind of exploration is generally accomplished by utilizing different packages. The purpose of 'ruminate' is to create a 'shiny' interface to make these tools more broadly available while creating reproducible results. | ||
| License: BSD_2_clause + file LICENSE | ||
| BugReports: https://github.com/john-harrold/ruminate/issues | ||
| URL: https://ruminate.ubiquity.tools/ | ||
| Encoding: UTF-8 | ||
| Depends: R (>= 4.2.0) | ||
| Imports: digest, dplyr, DT, flextable, formods, ggplot2, onbrand (>= | ||
| 1.0.3), PKNCA (>= 0.10.2), plotly, rhandsontable, rlang, shiny, | ||
| shinyAce, shinyWidgets, stringr, tidyr, utils, yaml | ||
| Suggests: cli, clipr, gridExtra, knitr, prompter, rmarkdown, readxl, | ||
| shinydashboard, testthat (>= 3.0.0), ubiquity | ||
| RoxygenNote: 7.2.3 | ||
| Config/testthat/edition: 3 | ||
| VignetteBuilder: knitr | ||
| NeedsCompilation: no | ||
| Packaged: 2023-08-29 00:25:17 UTC; jmh | ||
| Author: John Harrold [aut, cre] (<https://orcid.org/0000-0003-2052-4373>) | ||
| Maintainer: John Harrold <[email protected]> | ||
| Repository: CRAN | ||
| Date/Publication: 2023-08-29 16:50:05 UTC |
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| YEAR: 2023 | ||
| COPYRIGHT HOLDER: John Harrold |
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| 9e56cb6cc6291e1471781daac250682a *DESCRIPTION | ||
| c75dff1ced8e1f4ae311ec986bdc4bc7 *LICENSE | ||
| 0bc00c5c9edc30dfdaeb410c3e3b4308 *NAMESPACE | ||
| 526be51266152bdabb76c194b9998063 *NEWS.md | ||
| 565c81d65ce9884d4a2eb61976542030 *R/NCA_Server.R | ||
| b593ae8764cbcc39456a5fed38dc98fd *README.md | ||
| c6f4460246f2021a17f3dfcd0b93462e *build/vignette.rds | ||
| 2217d13098b597e5108df2143806bfbc *inst/doc/noncompartmental_analysis.R | ||
| 8cb97f45debae25816247d1353660bd9 *inst/doc/noncompartmental_analysis.Rmd | ||
| cd1dc131bd31cdb363e728eb3a7f8f7b *inst/doc/noncompartmental_analysis.html | ||
| 55cc875211bdfb5a406b3d933ba71f0c *inst/docker/Dockerfile | ||
| 353eee08cc3edad21d9647c526df79dc *inst/docker/local_container | ||
| ea8e8aacae973c1a70cebd492013355f *inst/templates/NCA.yaml | ||
| 72b67f7ca9aaf6fdcd03fa2c46fb7153 *inst/templates/NCA_module_components.R | ||
| 333f7336cca49311d9a056427dcff32f *inst/templates/ruminate.R | ||
| c12908b0dba515ec29bf7f3839fafb07 *inst/test_apps/NCA_funcs.R | ||
| 1d2230ec0e036557f05a865a37f34d46 *inst/test_apps/nca_app.R | ||
| 262b884e50f3181f8b693bc4f661c056 *man/NCA_Server.Rd | ||
| 7400df8189b28ea60f06ee6cd9c414dd *man/NCA_add_int.Rd | ||
| d08c98ed20f5368c994b8dddf4f3c38f *man/NCA_append_report.Rd | ||
| 869079044ae13c2c8eb689cc93ae0cdf *man/NCA_fetch_PKNCA_meta.Rd | ||
| 5d9ecb108512b47e314200cf44d160d9 *man/NCA_fetch_ana_ds.Rd | ||
| 01b570683106b2319f6e6ea033cc8c7b *man/NCA_fetch_ana_pknca.Rd | ||
| f4b43b650018840fac04da0d742ea390 *man/NCA_fetch_code.Rd | ||
| 7dd4377ba9628ed4726c27cf441e3151 *man/NCA_fetch_current_ana.Rd | ||
| 0a93f5aa1d444ec9fc318ccf062a8b43 *man/NCA_fetch_current_obj.Rd | ||
| a6d65b50ad37e2aa9eaf78f39d0bddd8 *man/NCA_fetch_data_format.Rd | ||
| a0ccf02754fcf91f9ae6ce95e67bd7cc *man/NCA_fetch_ds.Rd | ||
| f6f0157d5288fb5dc50d4540427a3caf *man/NCA_fetch_np_meta.Rd | ||
| ac8203d8760ef3a855bcf8db24ec53c7 *man/NCA_fetch_state.Rd | ||
| 1950a5f1e04b13f91823a8022d368ea9 *man/NCA_find_col.Rd | ||
| 0e93b5c68e1e6fe3f1b5007b1e4ac931 *man/NCA_init_state.Rd | ||
| 63eccdc1a359a01a695f146c8931670a *man/NCA_load_scenario.Rd | ||
| b9c898c3afce3e3633cf71b1dce70d2a *man/NCA_new_ana.Rd | ||
| 7eaf8309234f5c93247ca95aa4965fab *man/NCA_process_current_ana.Rd | ||
| 46e788646a63b0b8ce7464412093ed83 *man/NCA_set_current_ana.Rd | ||
| 543f25a7bdab2b999e1b1de0dd8921bd *man/NCA_test_mksession.Rd | ||
| 611954f5bfe6ea615fb5049dd756946d *man/apply_route_map.Rd | ||
| 2761c9f5bd2cda91dc0c714d20e17d63 *man/dose_records_builder.Rd | ||
| b9e5c76579fb1fb8e78a77d8126bd527 *man/figures/logo.png | ||
| b8aad6ce651b8612f5bce653b2c3a6de *man/mk_figure_ind_obs.Rd | ||
| bfc41fe5b0194c4681bf67863d309958 *man/mk_table_ind_obs.Rd | ||
| 08eb367677788de42c3912a8c46a565c *man/mk_table_nca_params.Rd | ||
| b2ecaf17d6dcccb4d4a8d0108e693f2a *man/nca_builder.Rd | ||
| 17b973b7075577043b8f2f6acc2ae96f *man/ruminate.Rd | ||
| 46e0221fc3ae596094a6ed89b1abb44e *man/run_nca_components.Rd | ||
| c8f327d23d2d19f4d7f6fb2ff5de1485 *tests/testthat.R | ||
| 8370972831cc6c9080daf72a78f4efa7 *tests/testthat/test-NCA.R | ||
| 4bca8ac82fa2bcb697f10b887bf7408c *tests/testthat/test-span_table.R | ||
| 405556c04d675b545ce9515939407741 *vignettes/NCA_presim.RData | ||
| 8cb97f45debae25816247d1353660bd9 *vignettes/noncompartmental_analysis.Rmd |
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| # Generated by roxygen2: do not edit by hand | ||
|
|
||
| export(NCA_Server) | ||
| export(NCA_append_report) | ||
| export(NCA_fetch_PKNCA_meta) | ||
| export(NCA_fetch_ana_ds) | ||
| export(NCA_fetch_ana_pknca) | ||
| export(NCA_fetch_code) | ||
| export(NCA_fetch_current_ana) | ||
| export(NCA_fetch_current_obj) | ||
| export(NCA_fetch_data_format) | ||
| export(NCA_fetch_ds) | ||
| export(NCA_fetch_np_meta) | ||
| export(NCA_fetch_state) | ||
| export(NCA_find_col) | ||
| export(NCA_new_ana) | ||
| export(NCA_process_current_ana) | ||
| export(NCA_set_current_ana) | ||
| export(NCA_test_mksession) | ||
| export(apply_route_map) | ||
| export(dose_records_builder) | ||
| export(mk_figure_ind_obs) | ||
| export(mk_table_ind_obs) | ||
| export(mk_table_nca_params) | ||
| export(nca_builder) | ||
| export(ruminate) | ||
| export(run_nca_components) | ||
| import(dplyr) | ||
| import(formods) | ||
| import(rhandsontable) | ||
| import(shiny) | ||
| import(tidyr) | ||
| importFrom(digest,digest) | ||
| importFrom(rlang,":=") | ||
| importFrom(shinyAce,aceEditor) | ||
| importFrom(shinyAce,updateAceEditor) | ||
| importFrom(stringr,str_detect) | ||
| importFrom(stringr,str_replace) | ||
| importFrom(stringr,str_split) | ||
| importFrom(utils,head) |
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| # ruminate 0.1.1 | ||
| - Initial release |
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