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update README
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chhylp123 committed Oct 14, 2024
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Expand Up @@ -179,6 +179,14 @@ homologous region in haplotype 2 to scaffold haplotype 1. Below is an example us
hifiasm -o NA12878.asm -t32 --dual-scaf HiFi-reads.fq.gz
```

### <a name="ul"></a>Preserve more telomeres for T2T assemblies

Hifiasm can preserve more telomeres by specifying the telomere motif using the `--telo-m` option.
Below is an example applied to human genome assembly.
```sh
hifiasm -o NA12878.asm -t32 --telo-m CCCTAA HiFi-reads.fq.gz
```

### <a name="output"></a>Output files

Hifiasm generates different types of assemblies based on the input data.
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