fix: update Geneformer version installed in CI (#1357)

* update Geneformer version installed in CI * git lfs install
chanzuckerberg · Feb 14, 2025 · b8a378b · b8a378b
1 parent 77fdea0
commit b8a378b
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diff --git a/.github/workflows/py-unittests.yml b/.github/workflows/py-unittests.yml
@@ -38,6 +38,12 @@ jobs:
           cache-dependency-path: |
             api/**/pyproject.toml
             api/**/requirements*.txt
+      - name: Install git-lfs (Linux)
+        if: matrix.os == 'sc-dev-64g-runner'
+        run: |
+          sudo apt-get update
+          sudo apt-get install git-lfs
+          git lfs install
       - name: Install dependencies (including experimental)
         run: |
           python -m pip install -U pip setuptools wheel

diff --git a/api/python/cellxgene_census/scripts/requirements-dev.txt b/api/python/cellxgene_census/scripts/requirements-dev.txt
@@ -5,5 +5,5 @@ twine
 coverage
 nbqa
 transformers[torch]
-git+https://huggingface.co/ctheodoris/Geneformer@471eefc; python_version>='3.10'
+git+https://huggingface.co/ctheodoris/Geneformer@ebc1e096; python_version>='3.10'
 proxy.py