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Added Topology Surface Charge SCI-1404 #69

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merged 3 commits into from
Oct 8, 2024
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@Alex-AMC Alex-AMC commented Oct 1, 2024

  • Added the ability to calculate the topology surface charge, which accounts for the node area % from the total surface. This better represents the available surface charge based on the atom position and steric hindrance.

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all looks alright, a couple of comments but feel free to ignore

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see triangles

@ccdc-opensource ccdc-opensource deleted a comment from github-actions bot Oct 3, 2024
@Alex-AMC Alex-AMC merged commit 7ab5791 into main Oct 8, 2024
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@Alex-AMC Alex-AMC deleted the surface_charge_script branch October 8, 2024 09:45
@@ -11,7 +11,7 @@ Charges are currently calculated using the Gasteiger charge model. Further devel

Example Output:

![Example Output](assets/example_output.png)
![Example Output](assets/example_output_hxacan28.png)

> **Note** - When comparing charges for non-CSD structures and structures from mol2 files the values might be different as the bonding might not be the same. When importing a mol2 file the bonding and charges may have to be calculated on the fly, whereas this information is assigned for CSD entries.
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[markdownlint] reported by reviewdog 🐶
MD013/line-length Line length [Expected: 200; Actual: 300]

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sonarqubecloud bot commented Oct 8, 2024

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4 participants