[updated normal tissue trial]

[stockschl]

updated study for normal tissue trial

Cancer studies updated in this pull request:

• normal_hlsc_sanger_2019 (local server only)

checks

For all pull requests:

• Passes validation

For a new study (in addition to above):

• [✅︎] Does study name and study ID follow our convention? e.g. Tumor_Type (Institue, Journal Year); brca_mskcc_2015
• [✅︎] is study meta data complete? e.g. pmid, group of PUBLIC
• [✅︎] were all samples profiled with WES/WGS? If not, is gene panel file curated?
• [✅︎] are oncotree codes of all samples curated; Cancer Type and Cancer Type Detailed needs to be added in addition to Oncotree Code
• [✅︎] clinical sample and patient data with meta files
• [✅︎] mutations data with meta files
• [✅︎] MAF is based on hg19
• MAF with 2 isoforms: uniprot and mskcc
• CNA data with meta files
• CNA segment data with meta files
• Expression data including z-scores with meta files
• [✅︎] Case-lists for all profiles.
• Manual checking (Niki or JJ): Triage or private Portal link here