BRCA AURORA 2019 cBIO Upload

public/brca_aurora_2022/case_lists/cases_cna.txt

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+cancer_study_identifier: brca_aurora_2022
+stable_id: brca_aurora_2022_cna
+case_list_name: CNA 
+case_list_description: CNA samples
+case_list_category: all_cases_with_cna_data
+case_list_ids: AUR-AE5H-TTP1-A-1-1	AUR-AEPZ-TTM1-A-1-1	AUR-AER4-TTM2-A-1-1	AUR-AER6-TTM7-A-1-1	AUR-AERX-TTM1-A-1-1	AUR-AF99-TTP1-A-1-0	AUR-AFE4-TTM4-A-1-1	AUR-AFE5-TTM4-A-1-1	AUR-ADCB-TTM1-A-1-1	AUR-AEPZ-TTP1-A-1-1	AUR-AER4-TTP1-A-1-0	AUR-AER6-TTM10-A-1-1	AUR-AER6-TTM9-A-1-1	AUR-AER8-TTM1-A-1-1	AUR-AERX-TTP1-A-1-0	AUR-AF95-TTM1-A-1-1	AUR-AFE4-TTM5-A-1-1	AUR-AFE5-TTM5-A-1-1	AUR-ADCB-TTP1-A-13-0	AUR-AE6X-TTM1-A-1-1	AUR-AER6-TTM1-A-1-1	AUR-AER6-TTP1-A-1-0	AUR-AER8-TTM2-A-1-1	AUR-AF95-TTP1-A-1-0	AUR-AF9A-TTM1-A-1-1	AUR-AFE4-TTM6-A-1-1	AUR-AFE5-TTM6-A-1-1	AUR-AE6X-TTP1-A-1-0	AUR-AER2-TTM1-A-1-1	AUR-AER6-TTM2-A-1-1	AUR-AER8-TTP1-A-1-0	AUR-AERY-TTM1-A-1-1	AUR-AF9A-TTP1-A-1-0	AUR-AFE4-TTP1-A-1-0	AUR-AFE5-TTM7-A-1-1	AUR-AE5G-TTM1-A-1-1	AUR-AER2-TTM3-A-1-1	AUR-AER5-TTM4-A-1-1	AUR-AER6-TTM3-A-1-1	AUR-AER7-TTM1-A-1-1	AUR-AERY-TTP1-A-1-0	AUR-AF98-TTM1-A-1-1	AUR-AFE5-TTM8-A-1-1	AUR-AE5G-TTP1-A-1-1	AUR-AE6Y-TTM1-A-1-1	AUR-AER2-TTP1-A-1-1	AUR-AER5-TTM5-A-1-1	AUR-AER7-TTM2-A-1-1	AUR-AERW-TTM1-A-1-1	AUR-AF98-TTP1-A-1-0	AUR-AFE4-TTM1-A-1-1	AUR-AFE5-TTM10-A-1-1	AUR-AFE5-TTM9-A-1-1	AUR-AE6Y-TTP1-A-1-0	AUR-AER5-TTP2-A-1-1	AUR-AER6-TTM5-A-1-1	AUR-AER7-TTM4-A-1-1	AUR-AERW-TTP1-B-1-0	AUR-AF94-TTM1-A-1-1	AUR-AFE4-TTM2-A-1-1	AUR-AFE5-TTM1-A-1-1	AUR-AFE5-TTP1-A-1-0	AUR-AE5H-TTM1-A-1-1	AUR-AER4-TTM1-A-1-1	AUR-AER5-TTP3-A-1-0	AUR-AER6-TTM6-A-1-1	AUR-AER7-TTP1-A-1-0	AUR-AF94-TTP1-A-1-0	AUR-AF99-TTM1-A-1-1	AUR-AFE4-TTM3-A-1-1	AUR-AFE5-TTM2-A-1-1	AUR-AFE6-TTM1-A-1-1	AUR-AFEA-TTM2-A-1-1	AUR-AFEC-TTM3-A-1-1	AUR-AFKB-TTP1-A-10-0	AUR-AFR2-TTM1-A-1-1	AUR-AFSO-TTP1-A-8-0	AUR-AFUI-TTM1-A-1-0	AUR-AFE6-TTM2-A-1-1	AUR-AFE9-TTM1-A-1-1	AUR-AFEA-TTM3-A-1-1	AUR-AFEC-TTM4-A-1-1	AUR-AFR2-TTP1-A-1-1	AUR-AFR5-TTM1-A-1-1	AUR-AFUI-TTP1-A-1-0	AUR-AG0M-TTM1-A-2-1	AUR-AFE6-TTP1-A-1-0	AUR-AFE9-TTM2-A-1-1	AUR-AFEA-TTM4-A-1-1	AUR-AFEC-TTM5-A-1-1	AUR-AFKD-TTM1-A-1-1	AUR-AFR5-TTP1-A-1-1	AUR-AFSP-TTM1-A-8-0	AUR-AFUM-TTM1-A-1-1	AUR-AG0M-TTP1-A-2-0	AUR-AFE9-TTM3-A-1-1	AUR-AFEA-TTM6-A-1-0	AUR-AFEC-TTM6-A-1-1	AUR-AFKD-TTP1-A-1-1	AUR-AFR3-TTM1-A-1-1	AUR-AFSP-TTP1-A-8-0	AUR-AFUK-TTM1-A-1-0	AUR-AFUM-TTP1-A-1-0	AUR-AFUP-TTM1-A-1-1	AUR-AFE7-TTM1-A-1-1	AUR-AFE9-TTM4-A-1-1	AUR-AFEA-TTP1-A-1-0	AUR-AFEC-TTP1-A-1-0	AUR-AFR3-TTP1-A-2-1	AUR-AFSL-TTM1-A-8-0	AUR-AFUK-TTM2-A-1-0	AUR-AFUP-TTP1-A-1-0	AUR-AG0N-TTM1-A-1-1	AUR-AFE7-TTM2-A-1-1	AUR-AFE9-TTP1-A-1-0	AUR-AFKF-TTM1-A-1-1	AUR-AFSL-TTP1-A-8-0	AUR-AFUG-TTM1-A-1-1	AUR-AFUK-TTP1-A-1-0	AUR-AFUN-TTM1-A-1-0	AUR-AG0N-TTP1-A-1-0	AUR-AFE7-TTM3-A-1-1	AUR-AFKF-TTP1-A-10-0	AUR-AFR4-TTM1-A-1-1	AUR-AFUN-TTP1-A-1-0	AUR-AG0J-TTM1-A-1-0	AUR-AFE7-TTP2-A-1-1	AUR-AFEA-TTM1-A-1-1	AUR-AFEC-TTM1-A-1-1	AUR-AFKB-TTM1-A-1-1	AUR-AFR4-TTP1-A-1-1	AUR-AFSO-TTM1-A-8-0	AUR-AG0J-TTP1-A-1-0	AUR-AG12-TTM1-A-1-1	AUR-AG12-TTP1-A-1-0

public/brca_aurora_2022/case_lists/cases_methylation.txt

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+cancer_study_identifier: brca_aurora_2022
+stable_id: brca_aurora_2022_methylation
+case_list_name: METHYLATION
+case_list_description: METHYLATION samples
+case_list_category: all_cases_with_methylation_data
+case_list_ids: AUR-AD9E-TTM1-A-2-1	AUR-AD9E-TTM2-A-1-1	AUR-AD9F-TTM1-A-1-1	AUR-AD9F-TTM2-A-2-1	AUR-AD9F-TTM3-A-1-1	AUR-AD9G-TTM1-A-2-1	AUR-AD9G-TTM2-A-1-1	AUR-AD9G-TTM3-A-1-1	AUR-AD9G-TTP1-B-4-0	AUR-AD9H-TTM1-A-2-1	AUR-AD9H-TTM2-A-1-1	AUR-AD9H-TTM3-A-1-1	AUR-AD9I-TTM3-A-1-1	AUR-ADCB-TTM1-A-1-1	AUR-ADCB-TTP1-A-13-0	AUR-AE5G-TTM1-A-1-1	AUR-AE5G-TTP1-A-1-1	AUR-AE5H-TTM1-A-1-1	AUR-AE5H-TTP1-A-1-1	AUR-AE6X-TTM1-A-1-1	AUR-AE6Y-TTM1-A-1-1	AUR-AE6Y-TTP1-A-1-0	AUR-AEPZ-TTM1-A-1-1	AUR-AEPZ-TTP1-A-1-1	AUR-AER2-TTM1-A-1-1	AUR-AER2-TTM3-A-1-1	AUR-AER2-TTP1-A-1-1	AUR-AER4-TTM1-A-1-1	AUR-AER4-TTM2-A-1-1	AUR-AER5-TTM4-A-1-1	AUR-AER5-TTM5-A-1-1	AUR-AER5-TTP2-A-1-1	AUR-AER5-TTP3-A-1-0	AUR-AER6-TTM1-A-1-1	AUR-AER6-TTM10-A-1-1	AUR-AER6-TTM2-A-1-1	AUR-AER6-TTM3-A-1-1	AUR-AER6-TTM5-A-1-1	AUR-AER6-TTM6-A-1-1	AUR-AER6-TTM7-A-1-1	AUR-AER6-TTM9-A-1-1	AUR-AER6-TTP1-A-1-0	AUR-AER7-TTM1-A-1-1	AUR-AER7-TTM2-A-1-1	AUR-AER7-TTM4-A-1-1	AUR-AER8-TTM1-A-1-1	AUR-AER8-TTM2-A-1-1	AUR-AER8-TTP1-A-1-0	AUR-AERW-TTP1-B-1-0	AUR-AERX-TTP1-A-1-0	AUR-AERY-TTM1-A-1-1	AUR-AF94-TTM1-A-1-1	AUR-AF94-TTP1-A-1-0	AUR-AF95-TTM1-A-1-1	AUR-AF95-TTP1-A-1-0	AUR-AF98-TTM1-A-1-1	AUR-AF98-TTP1-A-1-0	AUR-AF99-TTM1-A-1-1	AUR-AF9A-TTM1-A-1-1	AUR-AF9A-TTP1-A-1-0	AUR-AFE4-TTM1-A-1-1	AUR-AFE4-TTM2-A-1-1	AUR-AFE4-TTM3-A-1-1	AUR-AFE4-TTM4-A-1-1	AUR-AFE4-TTM5-A-1-1	AUR-AFE4-TTM6-A-1-1	AUR-AFE5-TTM1-A-1-1	AUR-AFE5-TTM10-A-1-1	AUR-AFE5-TTM2-A-1-1	AUR-AFE5-TTM4-A-1-1	AUR-AFE5-TTM5-A-1-1	AUR-AFE5-TTM6-A-1-1	AUR-AFE5-TTM7-A-1-1	AUR-AFE5-TTM8-A-1-1	AUR-AFE5-TTM9-A-1-1	AUR-AFE5-TTP1-A-1-0	AUR-AFE6-TTM1-A-1-1	AUR-AFE6-TTM2-A-1-1	AUR-AFE7-TTM1-A-1-1	AUR-AFE7-TTM2-A-1-1	AUR-AFE7-TTM3-A-1-1	AUR-AFE7-TTP2-A-1-1	AUR-AFE9-TTM1-A-1-1	AUR-AFE9-TTM3-A-1-1	AUR-AFE9-TTM4-A-1-1	AUR-AFEA-TTM1-A-1-1	AUR-AFEA-TTM2-A-1-1	AUR-AFEA-TTM3-A-1-1	AUR-AFEA-TTM4-A-1-1	AUR-AFEA-TTM6-A-1-0	AUR-AFEA-TTP2-A-1-0	AUR-AFEC-TTM1-A-1-1	AUR-AFEC-TTM3-A-1-1	AUR-AFEC-TTM4-A-1-1	AUR-AFEC-TTM6-A-1-1	AUR-AFEC-TTP1-A-1-0	AUR-AFKB-TTM1-A-1-1	AUR-AFKB-TTP1-A-10-0	AUR-AFKD-TTM1-A-1-1	AUR-AFKD-TTP1-A-1-1	AUR-AFKF-TTM1-A-1-1	AUR-AFKF-TTP1-A-10-0	AUR-AFR2-TTM1-A-1-1	AUR-AFR2-TTP1-A-1-1	AUR-AFR3-TTM1-A-1-1	AUR-AFR3-TTP1-A-2-1	AUR-AFR4-TTM1-A-1-1	AUR-AFR5-TTM1-A-1-1	AUR-AFR5-TTP1-A-1-1	AUR-AFSL-TTM1-A-8-0	AUR-AFSL-TTP1-A-8-0	AUR-AFSO-TTM1-A-8-0	AUR-AFSO-TTP1-A-8-0	AUR-AFUG-TTM1-A-1-1	AUR-AFUI-TTM1-A-1-0	AUR-AFUI-TTP1-A-1-0	AUR-AFUK-TTM1-A-1-0	AUR-AFUK-TTM2-A-1-0	AUR-AFUK-TTP1-A-1-0	AUR-AFUL-TTM1-A-1-1	AUR-AFUL-TTP1-A-1-1	AUR-AFUM-TTM1-A-1-1	AUR-AFUN-TTM1-A-1-0	AUR-AFUN-TTP1-A-1-0	AUR-AFUP-TTM1-A-1-1	AUR-AFUP-TTP1-A-1-0	AUR-AG0J-TTM1-A-1-0	AUR-AG0J-TTP1-A-1-0	AUR-AG0M-TTM1-A-2-1	AUR-AG0N-TTM1-A-1-1	AUR-AG0N-TTP1-A-1-0

public/brca_aurora_2022/case_lists/cases_rna_seq_mrna.txt

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+cancer_study_identifier: brca_aurora_2022
+stable_id: brca_aurora_2022_rna_seq_mrna
+case_list_name: Samples with mRNA (log2 transformed z-Scores) data
+case_list_description: Samples with CNV (log2 transformed z-Scores) data
+case_list_category: all_cases_with_mrna_rnaseq_data
+case_list_ids: AUR-AFEA-TTP1-A-1-0	AUR-AFEA-TTM4-A-1-1	AUR-AFEA-TTM2-A-1-1	AUR-AFEA-TTM1-A-1-1	AUR-AFEA-TTM3-A-1-1	AUR-AFEA-TTM6-A-1-0	AUR-AFE7-TTP2-A-1-1	AUR-AFE7-TTM2-A-1-1	AUR-AFE7-TTM1-A-1-1	AUR-AFE7-TTM3-A-1-1	AUR-AD9G-TTP1-B-4-0	AUR-AD9G-TTM2-A-1-1	AUR-AD9G-TTM3-A-1-1	AUR-AFE5-TTP1-A-1-0	AUR-AFE5-TTM4-A-1-1	AUR-AFE5-TTM9-A-1-1	AUR-AG0N-TTP1-A-1-0	AUR-AG0N-TTM1-A-1-1	AUR-AG0M-TTP1-A-2-0	AUR-AG0M-TTM1-A-2-1	AUR-AG0J-TTP1-A-1-0	AUR-AG0J-TTM1-A-1-0	AUR-AFSP-TTP1-A-8-0	AUR-AFSP-TTM1-A-8-0	AUR-AF9A-TTP1-A-1-0	AUR-AF9A-TTM1-A-1-1	AUR-AF98-TTP1-A-1-0	AUR-AF98-TTM1-A-1-1	AUR-AF95-TTP1-A-1-0	AUR-AF95-TTM1-A-1-1	AUR-AFSL-TTP1-A-8-0	AUR-AFSL-TTM1-A-8-0	AUR-AFR5-TTP1-A-1-1	AUR-AFR5-TTM1-A-1-1	AUR-AE6Y-TTP1-A-1-0	AUR-AE6Y-TTM1-A-1-1	AUR-AE5H-TTP1-A-1-1	AUR-AE5H-TTM1-A-1-1	AUR-AFUI-TTP1-A-1-0	AUR-AFUI-TTM1-A-1-0	AUR-AER7-TTP1-A-1-0	AUR-AER7-TTM4-A-1-1	AUR-AER6-TTP1-A-1-0	AUR-AER6-TTM2-A-1-1	AUR-AER6-TTM3-A-1-1	AUR-AER6-TTM7-A-1-1	AUR-AER6-TTM9-A-1-1	AUR-AER6-TTM6-A-1-1	AUR-AER6-TTM5-A-1-1	AUR-AER6-TTM1-A-1-1	AUR-AER6-TTM10-A-1-1	AUR-AFEC-TTP2-A-1-1	AUR-AFEC-TTM3-A-1-1	AUR-AFEC-TTM4-A-1-1	AUR-AFEC-TTM6-A-1-1	AUR-AG12-TTP1-A-1-0	AUR-AG12-TTM1-A-1-1	AUR-AERX-TTP1-A-1-0	AUR-AERX-TTM1-A-1-1	AUR-AERW-TTP1-B-1-0	AUR-AERW-TTM1-A-1-1	AUR-AFSO-TTP1-A-8-0	AUR-AFSO-TTM1-A-8-0	AUR-AFR3-TTP1-A-2-1	AUR-AFR3-TTM1-A-1-1	AUR-AE5G-TTP1-A-1-1	AUR-AE5G-TTM1-A-1-1	AUR-AF94-TTP1-A-1-0	AUR-AF94-TTM1-A-1-1	AUR-AFE4-TTP1-A-1-0	AUR-AFE4-TTM1-A-1-1	AUR-AFE4-TTM6-A-1-1	AUR-AFE4-TTM5-A-1-1	AUR-AFUN-TTP1-A-1-0	AUR-AFUN-TTM1-A-1-0	AUR-AFUL-TTP1-A-1-1	AUR-AFUL-TTM1-A-1-1	AUR-AFKB-TTP1-A-10-0	AUR-AFKB-TTM1-A-1-1	AUR-AEPZ-TTP1-A-1-1	AUR-AEPZ-TTM1-A-1-1	AUR-AER8-TTP1-A-1-0	AUR-AER8-TTM2-A-1-1	AUR-AFKF-TTP1-A-10-0	AUR-AFKF-TTM1-A-1-1	AUR-AFUM-TTP1-A-1-0	AUR-AFUM-TTM1-A-1-1	AUR-AFE9-TTP1-A-1-0	AUR-AFE9-TTM1-A-1-1	AUR-AFE9-TTM4-A-1-1	AUR-AFE9-TTM2-A-1-1	AUR-AFE9-TTM3-A-1-1	AUR-AER2-TTP1-A-1-1	AUR-AER2-TTM3-A-1-1	AUR-AER2-TTM1-A-1-1	AUR-AFE6-TTP1-A-1-0	AUR-AFE6-TTM2-A-1-1	AUR-AFE6-TTM1-A-1-1	AUR-AFR4-TTP1-A-1-1	AUR-AFR4-TTM1-A-1-1	AUR-AE6X-TTP1-A-1-0	AUR-AE6X-TTM1-A-1-1	AUR-AFKD-TTP1-A-1-1	AUR-AER4-TTP1-A-1-0	AUR-AD9J-TTP1-B-4-0	AUR-AFUO-TTP1-A-1-0	AUR-AFR2-TTP1-A-1-1	AUR-AERY-TTM1-A-1-1	AUR-ADCB-TTM1-A-1-1	AUR-AD9I-TTM3-A-1-1	AUR-AD9E-TTM1-A-1-1	AUR-AFUP-TTM1-A-1-1	AUR-AFUK-TTM2-A-1-0	AUR-AD9H-TTM1-A-2-1	AUR-AD9E-TTM4-A-1-1	AUR-AD9E-TTM2-A-1-1	AUR-AFUK-TTM1-A-1-0	AUR-AD9H-TTM3-A-1-1	AUR-AD9H-TTM2-A-1-1	AUR-AD9F-TTM3-A-1-1	AUR-AD9F-TTM1-A-1-1	AUR-AD9F-TTM2-A-1-1	AUR-AFUG-TTM1-A-1-1

public/brca_aurora_2022/case_lists/cases_samples_all.txt

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+cancer_study_identifier: brca_aurora_2022
+stable_id: brca_aurora_2022_all
+case_list_name: All samples
+case_list_description: All samples
+case_list_category: all_cases_in_study
+case_list_ids: AUR-AD9E-TTM1-A-1-1	AUR-AD9E-TTM1-A-2-1	AUR-AD9E-TTM2-A-1-1	AUR-AD9E-TTM4-A-1-1	AUR-AD9F-TTM1-A-1-1	AUR-AD9F-TTM2-A-1-1	AUR-AD9F-TTM2-A-2-1	AUR-AD9F-TTM3-A-1-1	AUR-AD9G-TTM1-A-1-1	AUR-AD9G-TTM1-A-2-1	AUR-AD9G-TTM2-A-1-1	AUR-AD9G-TTM3-A-1-1	AUR-AD9G-TTP1-B-4-0	AUR-AD9H-TTM1-A-2-1	AUR-AD9H-TTM2-A-1-1	AUR-AD9H-TTM3-A-1-1	AUR-AD9I-TTM3-A-1-1	AUR-AD9J-TTP1-B-4-0	AUR-ADCB-TTM1-A-1-1	AUR-ADCB-TTP1-A-13-0	AUR-AE5G-TTM1-A-1-1	AUR-AE5G-TTP1-A-1-1	AUR-AE5H-TTM1-A-1-1	AUR-AE5H-TTP1-A-1-1	AUR-AE6X-TTM1-A-1-1	AUR-AE6X-TTP1-A-1-0	AUR-AE6Y-TTM1-A-1-1	AUR-AE6Y-TTP1-A-1-0	AUR-AEPZ-TTM1-A-1-1	AUR-AEPZ-TTP1-A-1-1	AUR-AER2-TTM1-A-1-1	AUR-AER2-TTM3-A-1-1	AUR-AER2-TTP1-A-1-1	AUR-AER4-TTM1-A-1-1	AUR-AER4-TTM2-A-1-1	AUR-AER4-TTP1-A-1-0	AUR-AER5-TTM4-A-1-1	AUR-AER5-TTM5-A-1-1	AUR-AER5-TTP2-A-1-1	AUR-AER5-TTP3-A-1-0	AUR-AER6-TTM1-A-1-1	AUR-AER6-TTM10-A-1-1	AUR-AER6-TTM2-A-1-1	AUR-AER6-TTM3-A-1-1	AUR-AER6-TTM5-A-1-1	AUR-AER6-TTM6-A-1-1	AUR-AER6-TTM7-A-1-1	AUR-AER6-TTM9-A-1-1	AUR-AER6-TTP1-A-1-0	AUR-AER7-TTM1-A-1-1	AUR-AER7-TTM2-A-1-1	AUR-AER7-TTM4-A-1-1	AUR-AER7-TTP1-A-1-0	AUR-AER8-TTM1-A-1-1	AUR-AER8-TTM2-A-1-1	AUR-AER8-TTP1-A-1-0	AUR-AERW-TTM1-A-1-1	AUR-AERW-TTP1-B-1-0	AUR-AERX-TTM1-A-1-1	AUR-AERX-TTP1-A-1-0	AUR-AERY-TTM1-A-1-1	AUR-AERY-TTP1-A-1-0	AUR-AF94-TTM1-A-1-1	AUR-AF94-TTP1-A-1-0	AUR-AF95-TTM1-A-1-1	AUR-AF95-TTP1-A-1-0	AUR-AF98-TTM1-A-1-1	AUR-AF98-TTP1-A-1-0	AUR-AF99-TTM1-A-1-1	AUR-AF99-TTP1-A-1-0	AUR-AF9A-TTM1-A-1-1	AUR-AF9A-TTP1-A-1-0	AUR-AFE4-TTM1-A-1-1	AUR-AFE4-TTM2-A-1-1	AUR-AFE4-TTM3-A-1-1	AUR-AFE4-TTM4-A-1-1	AUR-AFE4-TTM5-A-1-1	AUR-AFE4-TTM6-A-1-1	AUR-AFE4-TTP1-A-1-0	AUR-AFE5-TTM1-A-1-1	AUR-AFE5-TTM10-A-1-1	AUR-AFE5-TTM2-A-1-1	AUR-AFE5-TTM4-A-1-1	AUR-AFE5-TTM5-A-1-1	AUR-AFE5-TTM6-A-1-1	AUR-AFE5-TTM7-A-1-1	AUR-AFE5-TTM8-A-1-1	AUR-AFE5-TTM9-A-1-1	AUR-AFE5-TTP1-A-1-0	AUR-AFE6-TTM1-A-1-1	AUR-AFE6-TTM2-A-1-1	AUR-AFE6-TTP1-A-1-0	AUR-AFE7-TTM1-A-1-1	AUR-AFE7-TTM2-A-1-1	AUR-AFE7-TTM3-A-1-1	AUR-AFE7-TTP2-A-1-1	AUR-AFE9-TTM1-A-1-1	AUR-AFE9-TTM2-A-1-1	AUR-AFE9-TTM3-A-1-1	AUR-AFE9-TTM4-A-1-1	AUR-AFE9-TTP1-A-1-0	AUR-AFEA-TTM1-A-1-1	AUR-AFEA-TTM2-A-1-1	AUR-AFEA-TTM3-A-1-1	AUR-AFEA-TTM4-A-1-1	AUR-AFEA-TTM6-A-1-0	AUR-AFEA-TTP1-A-1-0	AUR-AFEA-TTP2-A-1-0	AUR-AFEC-TTM1-A-1-1	AUR-AFEC-TTM3-A-1-1	AUR-AFEC-TTM4-A-1-1	AUR-AFEC-TTM5-A-1-1	AUR-AFEC-TTM6-A-1-1	AUR-AFEC-TTP1-A-1-0	AUR-AFEC-TTP2-A-1-1	AUR-AFKB-TTM1-A-1-1	AUR-AFKB-TTP1-A-10-0	AUR-AFKD-TTM1-A-1-1	AUR-AFKD-TTP1-A-1-1	AUR-AFKF-TTM1-A-1-1	AUR-AFKF-TTP1-A-10-0	AUR-AFR2-TTM1-A-1-1	AUR-AFR2-TTP1-A-1-1	AUR-AFR3-TTM1-A-1-1	AUR-AFR3-TTP1-A-2-1	AUR-AFR4-TTM1-A-1-1	AUR-AFR4-TTP1-A-1-1	AUR-AFR5-TTM1-A-1-1	AUR-AFR5-TTP1-A-1-1	AUR-AFSL-TTM1-A-8-0	AUR-AFSL-TTP1-A-8-0	AUR-AFSO-TTM1-A-8-0	AUR-AFSO-TTP1-A-8-0	AUR-AFSP-TTM1-A-8-0	AUR-AFSP-TTP1-A-8-0	AUR-AFUG-TTM1-A-1-1	AUR-AFUI-TTM1-A-1-0	AUR-AFUI-TTP1-A-1-0	AUR-AFUK-TTM1-A-1-0	AUR-AFUK-TTM2-A-1-0	AUR-AFUK-TTP1-A-1-0	AUR-AFUL-TTM1-A-1-1	AUR-AFUL-TTP1-A-1-1	AUR-AFUM-TTM1-A-1-1	AUR-AFUM-TTP1-A-1-0	AUR-AFUN-TTM1-A-1-0	AUR-AFUN-TTP1-A-1-0	AUR-AFUO-TTP1-A-1-0	AUR-AFUP-TTM1-A-1-1	AUR-AFUP-TTP1-A-1-0	AUR-AG0J-TTM1-A-1-0	AUR-AG0J-TTP1-A-1-0	AUR-AG0M-TTM1-A-2-1	AUR-AG0M-TTP1-A-2-0	AUR-AG0N-TTM1-A-1-1	AUR-AG0N-TTP1-A-1-0	AUR-AG12-TTM1-A-1-1	AUR-AG12-TTP1-A-1-0

public/brca_aurora_2022/case_lists/mutation_sequenced.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: brca_aurora_2022
+stable_id: brca_aurora_2022_sequenced
+case_list_name: Mutations
+case_list_description: Sample Mutations
+case_list_category: all_cases_with_mutation_data
+case_list_ids: AUR-AD9E-TTM1-A-1-1	AUR-AD9E-TTM2-A-1-1	AUR-AD9E-TTM4-A-1-1	AUR-AD9G-TTM1-A-1-1	AUR-AD9G-TTM2-A-1-1	AUR-AD9G-TTM3-A-1-1	AUR-AD9G-TTP1-B-4-0	AUR-AD9I-TTM3-A-1-1	AUR-ADCB-TTM1-A-1-1	AUR-ADCB-TTP1-A-13-0	AUR-AE5G-TTM1-A-1-1	AUR-AE5G-TTP1-A-1-1	AUR-AE5H-TTM1-A-1-1	AUR-AE5H-TTP1-A-1-1	AUR-AE6X-TTM1-A-1-1	AUR-AE6X-TTP1-A-1-0	AUR-AE6Y-TTM1-A-1-1	AUR-AE6Y-TTP1-A-1-0	AUR-AEPZ-TTM1-A-1-1	AUR-AEPZ-TTP1-A-1-1	AUR-AER2-TTM1-A-1-1	AUR-AER2-TTM3-A-1-1	AUR-AER2-TTP1-A-1-1	AUR-AER4-TTM1-A-1-1	AUR-AER4-TTM2-A-1-1	AUR-AER4-TTP1-A-1-0	AUR-AER5-TTM4-A-1-1	AUR-AER5-TTM5-A-1-1	AUR-AER5-TTP2-A-1-1	AUR-AER5-TTP3-A-1-0	AUR-AER6-TTM1-A-1-1	AUR-AER6-TTM10-A-1-1	AUR-AER6-TTM2-A-1-1	AUR-AER6-TTM3-A-1-1	AUR-AER6-TTM5-A-1-1	AUR-AER6-TTM6-A-1-1	AUR-AER6-TTM7-A-1-1	AUR-AER6-TTM9-A-1-1	AUR-AER6-TTP1-A-1-0	AUR-AER7-TTM1-A-1-1	AUR-AER7-TTM2-A-1-1	AUR-AER7-TTM4-A-1-1	AUR-AER8-TTM1-A-1-1	AUR-AER8-TTM2-A-1-1	AUR-AER8-TTP1-A-1-0	AUR-AERW-TTM1-A-1-1	AUR-AERW-TTP1-B-1-0	AUR-AERX-TTP1-A-1-0	AUR-AERY-TTM1-A-1-1	AUR-AERY-TTP1-A-1-0	AUR-AF94-TTM1-A-1-1	AUR-AF94-TTP1-A-1-0	AUR-AF95-TTM1-A-1-1	AUR-AF95-TTP1-A-1-0	AUR-AF98-TTM1-A-1-1	AUR-AF98-TTP1-A-1-0	AUR-AF99-TTM1-A-1-1	AUR-AF99-TTP1-A-1-0	AUR-AF9A-TTM1-A-1-1	AUR-AF9A-TTP1-A-1-0	AUR-AFE4-TTM1-A-1-1	AUR-AFE4-TTM2-A-1-1	AUR-AFE4-TTM3-A-1-1	AUR-AFE4-TTM4-A-1-1	AUR-AFE4-TTM5-A-1-1	AUR-AFE4-TTM6-A-1-1	AUR-AFE4-TTP1-A-1-0	AUR-AFE5-TTM1-A-1-1	AUR-AFE5-TTM10-A-1-1	AUR-AFE5-TTM2-A-1-1	AUR-AFE5-TTM4-A-1-1	AUR-AFE5-TTM5-A-1-1	AUR-AFE5-TTM6-A-1-1	AUR-AFE5-TTM7-A-1-1	AUR-AFE5-TTM8-A-1-1	AUR-AFE5-TTM9-A-1-1	AUR-AFE6-TTM1-A-1-1	AUR-AFE6-TTM2-A-1-1	AUR-AFE6-TTP1-A-1-0	AUR-AFE7-TTM1-A-1-1	AUR-AFE7-TTM2-A-1-1	AUR-AFE7-TTM3-A-1-1	AUR-AFE7-TTP2-A-1-1	AUR-AFE9-TTM1-A-1-1	AUR-AFE9-TTM2-A-1-1	AUR-AFE9-TTM3-A-1-1	AUR-AFE9-TTM4-A-1-1	AUR-AFE9-TTP1-A-1-0	AUR-AFEA-TTM1-A-1-1	AUR-AFEA-TTM2-A-1-1	AUR-AFEA-TTM3-A-1-1	AUR-AFEA-TTM4-A-1-1	AUR-AFEA-TTM6-A-1-0	AUR-AFEA-TTP2-A-1-0	AUR-AFEC-TTM1-A-1-1	AUR-AFEC-TTM3-A-1-1	AUR-AFEC-TTM4-A-1-1	AUR-AFEC-TTM5-A-1-1	AUR-AFEC-TTM6-A-1-1	AUR-AFEC-TTP1-A-1-0	AUR-AFKB-TTM1-A-1-1	AUR-AFKB-TTP1-A-10-0	AUR-AFKD-TTM1-A-1-1	AUR-AFKD-TTP1-A-1-1	AUR-AFKF-TTM1-A-1-1	AUR-AFKF-TTP1-A-10-0	AUR-AFR2-TTM1-A-1-1	AUR-AFR2-TTP1-A-1-1	AUR-AFR3-TTM1-A-1-1	AUR-AFR3-TTP1-A-2-1	AUR-AFR4-TTM1-A-1-1	AUR-AFR4-TTP1-A-1-1	AUR-AFR5-TTM1-A-1-1	AUR-AFR5-TTP1-A-1-1	AUR-AFSL-TTM1-A-8-0	AUR-AFSL-TTP1-A-8-0	AUR-AFSO-TTM1-A-8-0	AUR-AFUG-TTM1-A-1-1	AUR-AFUI-TTM1-A-1-0	AUR-AFUI-TTP1-A-1-0	AUR-AFUK-TTM1-A-1-0	AUR-AFUK-TTM2-A-1-0	AUR-AFUM-TTM1-A-1-1	AUR-AFUM-TTP1-A-1-0	AUR-AFUN-TTM1-A-1-0	AUR-AFUN-TTP1-A-1-0	AUR-AFUP-TTM1-A-1-1	AUR-AFUP-TTP1-A-1-0	AUR-AG0J-TTM1-A-1-0	AUR-AG0J-TTP1-A-1-0	AUR-AG0M-TTM1-A-2-1	AUR-AG0N-TTM1-A-1-1	AUR-AG12-TTM1-A-1-1	AUR-AG12-TTP1-A-1-0

public/brca_aurora_2022/meta_chemo.txt

@@ -0,0 +1,4 @@
+cancer_study_identifier: brca_aurora_us
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_chemo.txt

public/brca_aurora_2022/meta_clinical_patient.txt

@@ -0,0 +1,4 @@
+cancer_study_identifier: brca_aurora_2022
+genetic_alteration_type: CLINICAL
+datatype: PATIENT_ATTRIBUTES
+data_filename: data_clinical_patient.txt

public/brca_aurora_2022/meta_clinical_sample.txt

@@ -0,0 +1,4 @@
+cancer_study_identifier: brca_aurora_2022
+genetic_alteration_type: CLINICAL
+datatype: SAMPLE_ATTRIBUTES
+data_filename: data_clinical_sample.txt

public/brca_aurora_2022/meta_cna_hg38_seg.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: brca_aurora_2022
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+datatype: SEG
+reference_genome_id: hg38
+description: Segment data for the aurora cancer study
+data_filename: data_cna_hg38.seg

public/brca_aurora_2022/meta_log2_cna.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: brca_aurora_2022
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+datatype: LOG2-VALUE
+stable_id: log2CNA
+show_profile_in_analysis_tab: false
+profile_description: Log2 copy-number values for each gene
+profile_name: Log2 copy-number values
+data_filename: data_log2_cna.txt

public/brca_aurora_2022/meta_methylation_hm450.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: brca_aurora_2022
+genetic_alteration_type: METHYLATION
+datatype: CONTINUOUS
+stable_id: methylation_hm450
+show_profile_in_analysis_tab: false
+profile_name: Methylation (EPIC)
+profile_description: Methylation beta-values 
+data_filename: data_methylation_hm450.txt

public/brca_aurora_2022/meta_metsdx.txt

@@ -0,0 +1,4 @@
+cancer_study_identifier: brca_aurora_us
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_metsdx.txt

public/brca_aurora_2022/meta_mrna_seq_rsem_zscores_ref_all_samples.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: brca_aurora_2022
+genetic_alteration_type: MRNA_EXPRESSION
+datatype: Z-SCORE
+stable_id: rna_seq_mrna_median_Zscores
+show_profile_in_analysis_tab: true
+profile_name: mRNA Expression z-Scores (RNA Seq V2 RSEM)
+profile_description: mRNA z-Scores log2 transformed (RNA Seq V2 RSEM)
+data_filename: data_mrna_seq_rsem_zscores_ref_all_samples.txt

public/brca_aurora_2022/meta_mutations.txt

@@ -0,0 +1,9 @@
+cancer_study_identifier: brca_aurora_2022
+genetic_alteration_type: MUTATION_EXTENDED
+datatype: MAF
+stable_id: mutations
+show_profile_in_analysis_tab: true
+profile_description: Mutation data from whole exome sequencing.
+profile_name: Mutations
+swissprot_identifier: accession
+data_filename: data_mutations.txt

public/brca_aurora_2022/meta_resource_definition.txt

@@ -0,0 +1,3 @@
+cancer_study_identifier: brca_aurora_us
+resource_type: DEFINITION
+data_filename: data_resource_definition.txt

public/brca_aurora_2022/meta_resource_sample.txt

@@ -0,0 +1,3 @@
+cancer_study_identifier: brca_aurora_2022
+resource_type: SAMPLE
+data_filename: data_resources_samples.txt

public/brca_aurora_2022/meta_study.txt

@@ -0,0 +1,7 @@
+type_of_cancer: brca
+cancer_study_identifier: brca_aurora_2022
+name: Aurora-US Metastatic Breast Cancer
+description: Retrospective Tissue Collection; an initiative of the Breast Cancer Research Foundation
+groups: PUBLIC
+reference_genome: hg38
+add_global_case_list: false

public/brca_aurora_2022/meta_surgery.txt

@@ -0,0 +1,4 @@
+cancer_study_identifier: brca_aurora_us
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_surgery.txt