Update gene set version and update tests

cBioPortal · May 23, 2023 · 037b361 · 037b361
1 parent 383ea00
commit 037b361
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Showing 6 changed files with 7 additions and 7 deletions.
diff --git a/core/src/test/resources/integrationTestScript.xml b/core/src/test/resources/integrationTestScript.xml
@@ -35,7 +35,7 @@
                     <value>--data</value>
                     <value>src/test/resources/genesets/study_es_0_genesets.gmt</value>
                     <value>--new-version</value>
-                    <value>msigdb_6.1</value>
+                    <value>msigdb_7.5.1</value>
                 </list>
 
                 <!-- #2 Remove study if exists -->

diff --git a/core/src/test/scripts/test_data/api_json_system_tests/genesets_version.json b/core/src/test/scripts/test_data/api_json_system_tests/genesets_version.json
@@ -1 +1 @@
-["msigdb_6.1"]
+["msigdb_7.5.1"]
diff --git a/core/src/test/scripts/test_data/api_json_unit_tests/genesets_version.json b/core/src/test/scripts/test_data/api_json_unit_tests/genesets_version.json
@@ -1 +1 @@
-["msigdb_6.1"]
+["msigdb_7.5.1"]
diff --git a/core/src/test/scripts/test_data/study_es_0/meta_gsva_pvalues.txt b/core/src/test/scripts/test_data/study_es_0/meta_gsva_pvalues.txt
@@ -6,4 +6,4 @@ source_stable_id: gsva_scores
 profile_name: Pvalues of GSVA scores on oncogenic signatures gene sets
 profile_description: Pvalues GSVA scores using mRNA expression data
 data_filename: data_gsva_pvalues.txt
-geneset_def_version: msigdb_6.1
+geneset_def_version: msigdb_7.5.1
diff --git a/core/src/test/scripts/test_data/study_es_0/meta_gsva_scores.txt b/core/src/test/scripts/test_data/study_es_0/meta_gsva_scores.txt
@@ -7,4 +7,4 @@ profile_name: GSVA scores on oncogenic signatures gene sets
 profile_description: GSVA scores using mRNA expression data
 data_filename: data_gsva_scores.txt
 show_profile_in_analysis_tab: true
-geneset_def_version: msigdb_6.1
+geneset_def_version: msigdb_7.5.1
diff --git a/docs/File-Formats.md b/docs/File-Formats.md
@@ -1416,7 +1416,7 @@ profile_name: GSVA scores on oncogenic signatures gene sets
 profile_description: GSVA scores on oncogenic signatures gene sets using mRNA expression data calculated with GSVA version x with parameters x and y.
 data_filename: data_gsva_scores.txt
 show_profile_in_analysis_tab: true
-geneset_def_version: msigdb_6.1
+geneset_def_version: msigdb_7.5.1
 ```
 
 ### GSVA score data file
@@ -1460,7 +1460,7 @@ source_stable_id: gsva_scores
 profile_name: GSVA p-values for GSVA scores on oncogenic signatures gene sets
 profile_description: GSVA p-values for GSVA scores on oncogenic signatures gene sets using mRNA expression data calculated with the bootstrapping method in GSVA version x with parameters x and y.
 data_filename: data_gsva_pvalues.txt
-geneset_def_version: msigdb_6.1
+geneset_def_version: msigdb_7.5.1
 ```
 
 ### GSVA p-value data file