Skip to content

Commit

Permalink
move async to async migration home.spec.js mutation-mapper-tool.spec.… (
Browse files Browse the repository at this point in the history 
#4950)

* migrate remote e2e screenshot tests to async style

---------

Co-authored-by: alisman <[email protected]>
Co-authored-by: lismana <[email protected]>
  • Loading branch information
@bemijonathan @alisman
3 people committed Sep 19, 2024
1 parent f49b8c5 commit 7926a39
Show file tree
Hide file tree
Showing 25 changed files with 5,508 additions and 4,319 deletions.
143 changes: 81 additions & 62 deletions end-to-end-test/remote/specs/core/coexpression.screenshot.spec.js
View file
Original file line number Diff line number Diff line change
@@ -1,110 +1,129 @@
var assert = require('assert');
var expect = require('chai').expect;
var waitForOncoprint = require('../../../shared/specUtils').waitForOncoprint;
var setOncoprintMutationsMenuOpen = require('../../../shared/specUtils')
.setOncoprintMutationsMenuOpen;
var goToUrlAndSetLocalStorage = require('../../../shared/specUtils')
.goToUrlAndSetLocalStorage;
var waitForNetworkQuiet = require('../../../shared/specUtils')
.waitForNetworkQuiet;
var sessionServiceIsEnabled = require('../../../shared/specUtils')
.sessionServiceIsEnabled;
var assertScreenShotMatch = require('../../../shared/lib/testUtils')
.assertScreenShotMatch;

const {
getElement,
goToUrlAndSetLocalStorage,
COEXPRESSION_TIMEOUT,
clickElement,
} = require('../../../shared/specUtils_Async');
const CBIOPORTAL_URL = process.env.CBIOPORTAL_URL.replace(/\/$/, '');

var { COEXPRESSION_TIMEOUT } = require('../../../shared/specUtils');
const { assertScreenShotMatch } = require('../../../shared/lib/testUtils');

describe('coexpression tab screenshot tests', function() {
this.retries(2);

before(function() {
var url = `${CBIOPORTAL_URL}/results/coexpression?tab_index=tab_visualize&cancer_study_list=coadread_tcga_pub&cancer_study_id=coadread_tcga_pub&genetic_profile_ids_PROFILE_MUTATION_EXTENDED=coadread_tcga_pub_mutations&genetic_profile_ids_PROFILE_COPY_NUMBER_ALTERATION=coadread_tcga_pub_gistic&Z_SCORE_THRESHOLD=2.0&case_set_id=coadread_tcga_pub_nonhypermut&gene_list=KRAS+NRAS+BRAF&gene_set_choice=user-defined-list&Action=Submit`;
goToUrlAndSetLocalStorage(url);
this.retries(0);
before(async function() {
const url = `${CBIOPORTAL_URL}/results/coexpression?tab_index=tab_visualize&cancer_study_list=coadread_tcga_pub&cancer_study_id=coadread_tcga_pub&genetic_profile_ids_PROFILE_MUTATION_EXTENDED=coadread_tcga_pub_mutations&genetic_profile_ids_PROFILE_COPY_NUMBER_ALTERATION=coadread_tcga_pub_gistic&Z_SCORE_THRESHOLD=2.0&case_set_id=coadread_tcga_pub_nonhypermut&gene_list=KRAS+NRAS+BRAF&gene_set_choice=user-defined-list&Action=Submit`;
await goToUrlAndSetLocalStorage(url);
});
it('coexpression tab coadread_tcga_pub initial load', function() {
$('div[data-test="CoExpressionPlot"]').waitForExist({
it('coexpression tab coadread_tcga_pub initial load', async function() {
await getElement('div[data-test="CoExpressionPlot"]', {
timeout: COEXPRESSION_TIMEOUT,
}); // wait for plot to show up
var res = browser.checkElement('div[data-test="coExpressionTabDiv"]');
await (await getElement('body')).moveTo({ xOffset: 0, yOffset: 0 });
const res = await browser.checkElement(
'div[data-test="coExpressionTabDiv"]'
);
assertScreenShotMatch(res);
});
it('coexpression tab coadread_tcga_pub log scale x and y mutations on', function() {
$(
'div[data-test="coExpressionTabDiv"] input[data-test="logScale"]'
it('coexpression tab coadread_tcga_pub log scale x and y mutations on', async function() {
await (
await getElement(
'div[data-test="coExpressionTabDiv"] input[data-test="logScale"]'
)
).click();
$('body').moveTo({ xOffset: 0, yOffset: 0 });
var res = browser.checkElement('div[data-test="coExpressionTabDiv"]');
await (await getElement('body')).moveTo({ xOffset: 0, yOffset: 0 });
const res = await browser.checkElement(
'div[data-test="coExpressionTabDiv"]'
);
assertScreenShotMatch(res);
});
it('coexpression tab coadread_tcga_pub log scale x and y with regression line', function() {
$('input[data-test="ShowRegressionLine"]').click();
$('body').moveTo({ xOffset: 0, yOffset: 0 });
var res = browser.checkElement('div[data-test="coExpressionTabDiv"]');
it('coexpression tab coadread_tcga_pub log scale x and y with regression line', async function() {
await (
await getElement('input[data-test="ShowRegressionLine"]')
).click();
await (await getElement('body')).moveTo({ xOffset: 0, yOffset: 0 });
const res = await browser.checkElement(
'div[data-test="coExpressionTabDiv"]'
);
assertScreenShotMatch(res);
});
it('coexpression tab coadread_tcga_pub loc scale x and y mutations off', function() {
$('input[data-test="ShowRegressionLine"]').click();
$(
'div[data-test="coExpressionTabDiv"] input[data-test="ShowMutations"]'
it('coexpression tab coadread_tcga_pub loc scale x and y mutations off', async function() {
await (
await getElement('input[data-test="ShowRegressionLine"]')
).click();
$('body').moveTo({ xOffset: 0, yOffset: 0 });
var res = browser.checkElement('div[data-test="coExpressionTabDiv"]');
await (
await getElement(
'div[data-test="coExpressionTabDiv"] input[data-test="ShowMutations"]'
)
).click();
await (await getElement('body')).moveTo({ xOffset: 0, yOffset: 0 });
const res = await browser.checkElement(
'div[data-test="coExpressionTabDiv"]'
);
assertScreenShotMatch(res);
});
it('coexpression tab coadread_tcga_pub switch tabs', function() {
$('#coexpressionTabGeneTabs>ul>li:nth-child(2)>a').click(); // click on NRAS
$('body').moveTo({ xOffset: 0, yOffset: 0 });
browser.pause(100); // give time to start loading
$('div[data-test="CoExpressionPlot"]').waitForExist({
it('coexpression tab coadread_tcga_pub switch tabs', async function() {
await (
await getElement('#coexpressionTabGeneTabs>ul>li:nth-child(2)>a')
).click(); // click on NRAS
await (await getElement('body')).moveTo({ xOffset: 0, yOffset: 0 });
await browser.pause(100); // give time to start loading
await getElement('div[data-test="CoExpressionPlot"]', {
timeout: COEXPRESSION_TIMEOUT,
}); // wait for plot to show up
var res = browser.checkElement('div[data-test="coExpressionTabDiv"]');
const res = await browser.checkElement(
'div[data-test="coExpressionTabDiv"]'
);
assertScreenShotMatch(res);
});
it('coexpression tab coadread_tcga_pub switch profiles', function() {
browser.execute(function() {
it('coexpression tab coadread_tcga_pub switch profiles', async function() {
await browser.execute(function() {
resultsViewCoExpressionTab.onSelectProfileX({
value: 'coadread_tcga_pub_mrna',
});
});
browser.execute(function() {
await browser.execute(function() {
resultsViewCoExpressionTab.onSelectProfileY({
value: 'coadread_tcga_pub_mrna',
});
});
browser.pause(100); // give time to start loading
$('div[data-test="CoExpressionPlot"]').waitForExist({
await browser.pause(100);
await getElement('div[data-test="CoExpressionPlot"]', {
timeout: COEXPRESSION_TIMEOUT,
}); // wait for plot to show up
var res = browser.checkElement('div[data-test="coExpressionTabDiv"]');
const res = await browser.checkElement(
'div[data-test="coExpressionTabDiv"]'
);
assertScreenShotMatch(res);
});
it('coexpression tab coadread_tcga_pub switch profiles + regression line', function() {
$('input[data-test="ShowRegressionLine"]').click();
var res = browser.checkElement('div[data-test="coExpressionTabDiv"]');
it('coexpression tab coadread_tcga_pub switch profiles + regression line', async function() {
await clickElement('input[data-test="ShowRegressionLine"]');
const res = await browser.checkElement(
'div[data-test="coExpressionTabDiv"]'
);
assertScreenShotMatch(res);
});
it('coexpression tab coadread_tcga_pub with a lot of genes', function() {
goToUrlAndSetLocalStorage(
it('coexpression tab coadread_tcga_pub with a lot of genes', async function() {
await goToUrlAndSetLocalStorage(
`${CBIOPORTAL_URL}/results/coexpression?Action=Submit&RPPA_SCORE_THRESHOLD=2&Z_SCORE_THRESHOLD=2&cancer_study_id=coadread_tcga_pub&cancer_study_list=coadread_tcga_pub&case_set_id=coadread_tcga_pub_hypermut&data_priority=0&gene_list=AKR1C3%2520AR%2520CYB5A%2520CYP11A1%2520CYP11B1%2520CYP11B2%2520CYP17A1%2520CYP19A1%2520CYP21A2%2520HSD17B1%2520HSD17B10%2520HSD17B11%2520HSD17B12%2520HSD17B13%2520HSD17B14%2520HSD17B2%2520HSD17B3%2520HSD17B4%2520HSD17B6%2520HSD17B7%2520HSD17B8%2520HSD3B1%2520HSD3B2%2520HSD3B7%2520RDH5%2520SHBG%2520SRD5A1%2520SRD5A2%2520SRD5A3%2520STAR&geneset_list=%20&genetic_profile_ids_PROFILE_COPY_NUMBER_ALTERATION=coadread_tcga_pub_gistic&genetic_profile_ids_PROFILE_MUTATION_EXTENDED=coadread_tcga_pub_mutations&profileFilter=0&tab_index=tab_visualize`
);
$('div[data-test="CoExpressionPlot"]').waitForExist({
await getElement('div[data-test="CoExpressionPlot"]', {
timeout: COEXPRESSION_TIMEOUT,
}); // wait for plot to show up
var res = browser.checkElement('div[data-test="coExpressionTabDiv"]');
const res = await browser.checkElement(
'div[data-test="coExpressionTabDiv"]'
);
assertScreenShotMatch(res);
});

it('coexpression tab coadread_tcga_pub with user defined case list', function() {
goToUrlAndSetLocalStorage(
it('coexpression tab coadread_tcga_pub with user defined case list', async function() {
await goToUrlAndSetLocalStorage(
`${CBIOPORTAL_URL}/results/coexpression?Action=Submit&cancer_study_list=coadread_tcga_pub&case_ids=coadread_tcga_pub%3ATCGA-A6-2672-01%2Bcoadread_tcga_pub%3ATCGA-A6-2678-01%2Bcoadread_tcga_pub%3ATCGA-A6-3809-01%2Bcoadread_tcga_pub%3ATCGA-AA-3502-01%2Bcoadread_tcga_pub%3ATCGA-AA-3510-01%2Bcoadread_tcga_pub%3ATCGA-AA-3672-01%2Bcoadread_tcga_pub%3ATCGA-AA-3673-01%2Bcoadread_tcga_pub%3ATCGA-AA-3850-01%2Bcoadread_tcga_pub%3ATCGA-AA-3852-01%2Bcoadread_tcga_pub%3ATCGA-AA-3862-01%2Bcoadread_tcga_pub%3ATCGA-AA-3877-01%2Bcoadread_tcga_pub%3ATCGA-AA-3986-01%2Bcoadread_tcga_pub%3ATCGA-AA-3989-01%2Bcoadread_tcga_pub%3ATCGA-AA-3994-01%2Bcoadread_tcga_pub%3ATCGA-AA-A00L-01%2Bcoadread_tcga_pub%3ATCGA-AA-A010-01%2Bcoadread_tcga_pub%3ATCGA-AA-A02O-01%2Bcoadread_tcga_pub%3ATCGA-CM-4748-01&case_set_id=-1&clinicallist=PROFILED_IN_coadread_tcga_pub_mutations%2CPROFILED_IN_coadread_tcga_pub_gistic&gene_list=KRAS%0AAPC&genetic_profile_ids_PROFILE_COPY_NUMBER_ALTERATION=coadread_tcga_pub_gistic&genetic_profile_ids_PROFILE_MUTATION_EXTENDED=coadread_tcga_pub_mutations&show_samples=false&tab_index=tab_visualize`
);
$('div[data-test="CoExpressionPlot"]').waitForExist({
await getElement('div[data-test="CoExpressionPlot"]', {
timeout: COEXPRESSION_TIMEOUT,
}); // wait for plot to show up
var res = browser.checkElement('div[data-test="coExpressionTabDiv"]');
const res = await browser.checkElement(
'div[data-test="coExpressionTabDiv"]'
);
assertScreenShotMatch(res);
});
});
Loading

0 comments on commit 7926a39

Please sign in to comment.