Add Patient and Sample Resources to Study View (#4961)

* add "Files & Links" tab of the Patient View to the Study View (#10467)
cBioPortal · Aug 23, 2024 · 76e378e · 76e378e
1 parent b1a387c
commit 76e378e
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Showing 6 changed files with 431 additions and 16 deletions.
diff --git a/...te/screenshots/reference/tcga_pancancer_atlas_page_element_chrome_1600x1000.png b/...te/screenshots/reference/tcga_pancancer_atlas_page_element_chrome_1600x1000.png
diff --git a/src/pages/studyView/StudyViewPage.tsx b/src/pages/studyView/StudyViewPage.tsx
@@ -378,11 +378,8 @@ export default class StudyViewPage extends React.Component<
     }
 
     @computed get shouldShowResources() {
-        if (this.store.resourceIdToResourceData.isComplete) {
-            return _.some(
-                this.store.resourceIdToResourceData.result,
-                data => data.length > 0
-            );
+        if (this.store.resourceDefinitions.isComplete) {
+            return this.store.resourceDefinitions.result.length > 0;
         } else {
             return false;
         }

diff --git a/src/pages/studyView/StudyViewPageStore.ts b/src/pages/studyView/StudyViewPageStore.ts
@@ -5784,6 +5784,44 @@ export class StudyViewPageStore
         },
     });
 
+    readonly sampleResourceData = remoteData<{
+        [sampleId: string]: ResourceData[];
+    }>({
+        await: () => [this.resourceDefinitions, this.samples],
+        invoke: () => {
+            const sampleResourceDefinitions = this.resourceDefinitions.result!.filter(
+                d => d.resourceType === 'SAMPLE'
+            );
+            if (!sampleResourceDefinitions.length) {
+                return Promise.resolve({});
+            }
+
+            const res = _(this.samples.result!)
+                .map(sample =>
+                    sampleResourceDefinitions.map(resource =>
+                        internalClient.getAllResourceDataOfSampleInStudyUsingGET(
+                            {
+                                sampleId: sample.sampleId,
+                                studyId: sample.studyId,
+                                resourceId: resource.resourceId,
+                                projection: 'DETAILED',
+                            }
+                        )
+                    )
+                )
+                .flatten()
+                .value();
+
+            return Promise.all(res).then(resData =>
+                _(resData)
+                    .flatMap()
+                    .groupBy('sampleId')
+                    .mapValues(data => data)
+                    .value()
+            );
+        },
+    });
+
     readonly resourceIdToResourceData = remoteData<{
         [resourceId: string]: ResourceData[];
     }>({